Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H14
         (1301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   9.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   9.9  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 252 PPTPRQTPENSPPV 293
           PPTPR  P + PPV
Sbjct: 630 PPTPRTKPSHKPPV 643


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 271 VWRGVGGQSADVRDDAGRARHAGGVPWAP 185
           VWR  GG  +++ D          V WAP
Sbjct: 81  VWRETGGVWSELMDHTAHQASVNAVSWAP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,654,370
Number of Sequences: 5004
Number of extensions: 69287
Number of successful extensions: 259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)