Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H12
(1452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 36 0.080
04_03_0904 + 20717005-20718087 36 0.080
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 5.2
12_02_1174 - 26696869-26698191 29 6.9
12_02_0193 + 15242068-15242265,15242356-15244589,15244675-152449... 29 6.9
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 29 6.9
06_01_0486 - 3455030-3455770 29 6.9
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 35.9 bits (79), Expect = 0.080
Identities = 22/96 (22%), Positives = 24/96 (25%)
Frame = -2
Query: 1223 PXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHPPPQTXXXXXXPXPPXXGXXPXXXPP 1044
P PP P P HQP PPP P PP G PP
Sbjct: 49 PPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPP 108
Query: 1043 XXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXPXR 936
P P P ++ P R
Sbjct: 109 PPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPPPR 144
>04_03_0904 + 20717005-20718087
Length = 360
Score = 35.9 bits (79), Expect = 0.080
Identities = 32/131 (24%), Positives = 32/131 (24%), Gaps = 8/131 (6%)
Frame = -2
Query: 1166 PTXXXXAHKXXXP--HHPPPQTXXXXXXPXPPXXGXXPXXXPPXXXXXXPXXXXXXXPTX 993
PT A K P H PP PP P PP P PT
Sbjct: 35 PTPVKPAPKPEKPPKEHKPPH-HHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTPKPTP 93
Query: 992 PNXNXXPXQQXHKP------XXPXRXKXXXXXXXXLPXPXXXXXXPXXNXXXXXGXPSPX 831
P P H P P K P P P P P
Sbjct: 94 PPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPT 153
Query: 830 XPPXYTPXKXP 798
PP Y P P
Sbjct: 154 PPPTYKPQPKP 164
Score = 35.9 bits (79), Expect = 0.080
Identities = 31/152 (20%), Positives = 36/152 (23%), Gaps = 7/152 (4%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXP------HHPPPQTXXXXXXPXPPXXGXXPXXXP 1047
PP P P H PT P + P P+ P P P P
Sbjct: 93 PPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKP 152
Query: 1046 PXXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXX-PXRXKXXXXXXXXLPXPXXXXXXPX 870
P P P + KP P P P P
Sbjct: 153 TPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPT 212
Query: 869 XNXXXXXGXPSPXXPPXYTPXKXPHXXKXHXP 774
P P PP Y P P+ + P
Sbjct: 213 PTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKP 244
Score = 33.1 bits (72), Expect = 0.56
Identities = 40/183 (21%), Positives = 47/183 (25%), Gaps = 12/183 (6%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXX-PXXXPXXHQPTXXXXAHKXXXPHH 1122
P P P + P T P P P P + PT ++K +
Sbjct: 166 PTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPN 225
Query: 1121 PPP-------QTXXXXXXPXPPXXGXXPXXXPP--XXXXXXPXXXXXXXPT-XPNXNXXP 972
PPP P PP P PP P PT P P
Sbjct: 226 PPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTP 285
Query: 971 XQQXHKP-XXPXRXKXXXXXXXXLPXPXXXXXXPXXNXXXXXGXPSPXXPPXYTPXKXPH 795
+ P P P P P P+P PP YTP P
Sbjct: 286 TPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTP-TPPTYTPTPTPP 344
Query: 794 XXK 786
K
Sbjct: 345 YHK 347
>05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 5.2
Identities = 19/80 (23%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXPHHP-PPQTXXXXXXPXPPXXGXXPXXXPPXXXX 1032
PP P P A + HH PP P PP P PP
Sbjct: 58 PPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPP 117
Query: 1031 XXPXXXXXXXPTXPNXNXXP 972
P P P+ + P
Sbjct: 118 PAPAPPPTPTPKFPSSSANP 137
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 6.9
Identities = 32/142 (22%), Positives = 36/142 (25%)
Frame = -2
Query: 1223 PXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHPPPQTXXXXXXPXPPXXGXXPXXXPP 1044
P + PP P P P + PH PPP P PP P PP
Sbjct: 111 PEFKTPPALSPVPPP----PPPPRTRTRVEPPHRPPP------VKPQPPPSLPPPPPPPP 160
Query: 1043 XXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXPXRXKXXXXXXXXLPXPXXXXXXPXXN 864
P P P Q P P + P P
Sbjct: 161 PPPPPRPPSVKPPV-VQPKPQPPPSLQPPSPPPPPPTRP--------PSVKPPVVQPKPQ 211
Query: 863 XXXXXGXPSPXXPPXYTPXKXP 798
PSP PP P + P
Sbjct: 212 PPPTLPPPSPPPPPPTVPPRTP 233
>12_02_0193 + 15242068-15242265,15242356-15244589,15244675-15244926,
15245007-15245117,15245207-15245288,15245563-15245754
Length = 1022
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 1252 PPPXNXPXGXPXPKXXHXXXPXXPHXXTNQXXXQXPTKXXXPTTP 1118
PPP P P P P P Q PTK P TP
Sbjct: 585 PPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPTKQHAPPTP 629
>06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -3
Query: 1252 PPPXNXPXGXPXPKXXHXXXPXXPHXXTNQXXXQXPTKXXXPTTPHP 1112
PPP P P P P P Q PTK P P P
Sbjct: 585 PPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPTKQHAPPAPPP 631
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 6.9
Identities = 21/85 (24%), Positives = 22/85 (25%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P PR P P T P PP P P P P+ P
Sbjct: 68 PSPRCPSCHPPYTPPTPRPPPTP--PYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVP 125
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP PP P PP
Sbjct: 126 PPTPPSPPPYVPPPTPPSPPPYVPP 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,093
Number of Sequences: 37544
Number of extensions: 178619
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4617638984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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