Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H12
(1452 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 27 7.5
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 27 7.5
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 27 7.6
BC130531-1|AAI30532.1| 491|Homo sapiens Cas-Br-M (murine) ecotr... 31 7.9
BC130529-1|AAI30530.1| 491|Homo sapiens Cas-Br-M (murine) ecotr... 31 7.9
BC027460-1|AAH27460.2| 488|Homo sapiens CBLL1 protein protein. 31 7.9
AK026762-1|BAB15544.1| 491|Homo sapiens protein ( Homo sapiens ... 31 7.9
AC002467-2|AAS07390.1| 491|Homo sapiens unknown protein. 31 7.9
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 27 9.7
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing factor
protein.
Length = 707
Score = 27.5 bits (58), Expect(2) = 7.5
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXPHHPP--PQTXXXXXXPXPPXXGXXP 1059
PP P QP + PH PP PQ P PP P
Sbjct: 58 PPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 20/96 (20%), Positives = 21/96 (21%)
Frame = -2
Query: 1082 PPXXGXXPXXXPPXXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXPXRXKXXXXXXXXL 903
PP G P PP P P P Q P P
Sbjct: 142 PPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQG 201
Query: 902 PXPXXXXXXPXXNXXXXXGXPSPXXPPXYTPXKXPH 795
P P G P P + K PH
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTPGGH--PKPPH 235
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 27.5 bits (58), Expect(2) = 7.5
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXPHHPP--PQTXXXXXXPXPPXXGXXP 1059
PP P QP + PH PP PQ P PP P
Sbjct: 58 PPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 20/96 (20%), Positives = 21/96 (21%)
Frame = -2
Query: 1082 PPXXGXXPXXXPPXXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXPXRXKXXXXXXXXL 903
PP G P PP P P P Q P P
Sbjct: 142 PPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQG 201
Query: 902 PXPXXXXXXPXXNXXXXXGXPSPXXPPXYTPXKXPH 795
P P G P P + K PH
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTPGGH--PKPPH 235
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 27.5 bits (58), Expect(2) = 7.6
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXPHHPP--PQTXXXXXXPXPPXXGXXP 1059
PP P QP + PH PP PQ P PP P
Sbjct: 58 PPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 20/96 (20%), Positives = 21/96 (21%)
Frame = -2
Query: 1082 PPXXGXXPXXXPPXXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXPXRXKXXXXXXXXL 903
PP G P PP P P P Q P P
Sbjct: 142 PPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQG 201
Query: 902 PXPXXXXXXPXXNXXXXXGXPSPXXPPXYTPXKXPH 795
P P G P P + K PH
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTPGGH--PKPPH 235
>BC130531-1|AAI30532.1| 491|Homo sapiens Cas-Br-M (murine) ecotropic
retroviral transforming sequence-like 1 protein.
Length = 491
Score = 31.5 bits (68), Expect = 7.9
Identities = 22/85 (25%), Positives = 23/85 (27%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P P P P T Q PP P P A +HP
Sbjct: 343 PPPPPPPPISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYMNHP 402
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP P PP G P PP
Sbjct: 403 PP-------GPPPPQHGGPPVTAPP 420
>BC130529-1|AAI30530.1| 491|Homo sapiens Cas-Br-M (murine) ecotropic
retroviral transforming sequence-like 1 protein.
Length = 491
Score = 31.5 bits (68), Expect = 7.9
Identities = 22/85 (25%), Positives = 23/85 (27%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P P P P T Q PP P P A +HP
Sbjct: 343 PPPPPPPPISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYMNHP 402
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP P PP G P PP
Sbjct: 403 PP-------GPPPPQHGGPPVTAPP 420
>BC027460-1|AAH27460.2| 488|Homo sapiens CBLL1 protein protein.
Length = 488
Score = 31.5 bits (68), Expect = 7.9
Identities = 22/85 (25%), Positives = 23/85 (27%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P P P P T Q PP P P A +HP
Sbjct: 340 PPPPPPPPISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYMNHP 399
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP P PP G P PP
Sbjct: 400 PP-------GPPPPQHGGPPVTAPP 417
>AK026762-1|BAB15544.1| 491|Homo sapiens protein ( Homo sapiens cDNA:
FLJ23109 fis, clone LNG07754. ).
Length = 491
Score = 31.5 bits (68), Expect = 7.9
Identities = 22/85 (25%), Positives = 23/85 (27%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P P P P T Q PP P P A +HP
Sbjct: 343 PPPPPPPPISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYMNHP 402
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP P PP G P PP
Sbjct: 403 PP-------GPPPPQHGGPPVTAPP 420
>AC002467-2|AAS07390.1| 491|Homo sapiens unknown protein.
Length = 491
Score = 31.5 bits (68), Expect = 7.9
Identities = 22/85 (25%), Positives = 23/85 (27%)
Frame = -2
Query: 1298 PXPRXPXXXXXTXTXXPXKXXTXRXPXXQXPPXXXPXXXPXXHQPTXXXXAHKXXXPHHP 1119
P P P P T Q PP P P A +HP
Sbjct: 343 PPPPPPPPISHPMPHPPQAAGTPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYMNHP 402
Query: 1118 PPQTXXXXXXPXPPXXGXXPXXXPP 1044
PP P PP G P PP
Sbjct: 403 PP-------GPPPPQHGGPPVTAPP 420
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 27.5 bits (58), Expect(2) = 9.7
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -2
Query: 1208 PPXXXPXXXPXXHQPTXXXXAHKXXXPHHPP--PQTXXXXXXPXPPXXGXXP 1059
PP P QP + PH PP PQ P PP P
Sbjct: 58 PPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Score = 22.2 bits (45), Expect(2) = 9.7
Identities = 12/47 (25%), Positives = 12/47 (25%)
Frame = -2
Query: 1082 PPXXGXXPXXXPPXXXXXXPXXXXXXXPTXPNXNXXPXQQXHKPXXP 942
PP G P PP P P P Q P P
Sbjct: 142 PPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPP 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,860,136
Number of Sequences: 237096
Number of extensions: 898076
Number of successful extensions: 1697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21375562260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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