Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H10
(1344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 235 8e-63
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 235 8e-63
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 148 2e-36
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 148 2e-36
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 148 2e-36
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 4e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 5e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 8e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 39 0.001
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 27 4.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 7.8
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 235 bits (576), Expect = 8e-63
Identities = 110/123 (89%), Positives = 114/123 (92%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 252 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 431
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 432 LRP 440
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 235 bits (576), Expect = 8e-63
Identities = 110/123 (89%), Positives = 114/123 (92%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 252 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 431
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 432 LRP 440
LRP
Sbjct: 121 LRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 2e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M IFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 252 IQKESTLHLVLRLRGG 299
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 90.6 bits (215), Expect = 4e-19
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +3
Query: 72 MXIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYN 251
M I VKTLTGK I L+++ +D + +K ++++KEG PP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 252 IQKESTLHLVLRLRGGT 302
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 102 KTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 278
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 279 VLRLRGGTIEP 311
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 8e-04
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 84 VKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYNIQKE 263
+K + + V++ ++ +K I ++QRLI+AG+ L+D +L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 264 STLHLVLRL 290
++HLV L
Sbjct: 68 HSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 99 GKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 272
GK LE+E ++T +K ++ PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 134 VGSFHLQCNGLPRKGFDEYXHCVAPNEKRGXRRESKEFPI 15
VG FHL L KG + + + PN+ R E FPI
Sbjct: 139 VGDFHLDGKNLRAKGLNRIGNLIVPNDNY-CRFEEWIFPI 177
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 78 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLEDGRTLSD--YN 251
I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + ++
Sbjct: 6 IRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHD 65
Query: 252 IQKESTLHLVLRLRGGT 302
T HLV+ + T
Sbjct: 66 ATDLVTFHLVIAVFNST 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,842
Number of Sequences: 5004
Number of extensions: 52671
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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