Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H07
(1348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.48
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.6
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 27 5.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.16
Identities = 34/164 (20%), Positives = 34/164 (20%)
Frame = +2
Query: 767 PXXGGGGGXXPXXKXPPPPRGXGXXXXXPPPXXPPPXXXXXXXXXXGXXXXPPPXGGXXX 946
P G G PPPPR PP PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 947 XPXXGGXPXXKXXXXGPXXXXXPXXXRXGGXXXGPPPPXXXXXXXPXXGGXXPGXXXXXX 1126
P P R P PP P P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV-PTPPSLPPSAPPSL----PPSAPPSL 439
Query: 1127 XPXXPPXPPXPPXXXXXXPXPXGXGXXXPPXXXXGGXPPXGXXP 1258
P PP PP P P G PP PP P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGM-PAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 817 PPXGXXGXXFXXPPPXPPPXXXXXPXXXGGGXXXXPPXGGXXGXPP 954
PP G PPP PP P G PP G PP
Sbjct: 325 PPIGNGSSNSSLPPPPPP------PRSNAAGSIPLPPQGRSAPPPP 364
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.48
Identities = 33/148 (22%), Positives = 34/148 (22%), Gaps = 4/148 (2%)
Frame = +2
Query: 812 PPPPRGXGXXXXXPPPXXPPPXXXXXXXXXXGXXXXPPPXG-GXXXXPXXGGXPXXKXXX 988
PP P+ PPP P G P P G P P K
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK--- 1106
Query: 989 XGPXXXXXPXXXRXGGXXXGPPPPXXXXXXXPXXGGXXPGXXXXXXXPXXPP---XPPXP 1159
P P G P P P G P P P PP P
Sbjct: 1107 --PSVAVPPVPAPSGAPPV--PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 1160 PXXXXXXPXPXGXGXXXPPXXXXGGXPP 1243
P P P G PP
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.84
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 812 PPPPRGXGXXXXXPPPXXPPP 874
PPPP G PPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +1
Query: 805 KXPPPPXGXXGXXFXXPPPXPPPXXXXXPXXXGGGXXXXPPXGGXXGXPP 954
K PPPP P P P P P GG PP G G P
Sbjct: 730 KSPPPPP----PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 811 PPPPXGXXGXXFXXPPPXPPP 873
PPPP G PPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 811 PPPPXGXXGXXFXXPPPXPPP 873
PPPP G G PPP PPP
Sbjct: 764 PPPPPGVAGAG-PPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 580 PLXGGXGXPXXXKXLXGXGPPPP 648
P+ GG P + G GPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 797 PXXKXPPPPRGXGXXXXXPPPXXPPP 874
P PPPP G PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 108 PVSNYTLTILLCYCCNV 158
P+SN TL + L CCN+
Sbjct: 112 PISNTTLVLFLTECCNI 128
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 659 PXXXGGGGPXPXXXFXXXGXPXPPXRGGP 573
P G P P F G P PP G P
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPLPPIPGAP 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,153
Number of Sequences: 5004
Number of extensions: 59412
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -