Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H06
         (1322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPPXXKKXK 963
            P  P   G      PPPPPPP   K +
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 25.0 bits (52), Expect(2) = 2.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 1001 PPPPPPPXXKKXK 963
            PPPPPP   KK K
Sbjct: 25   PPPPPPGYVKKRK 37



 Score = 21.4 bits (43), Expect(2) = 2.3
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P           PPPPPP
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P   G      PPPPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,470
Number of Sequences: 5004
Number of extensions: 40589
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)