Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H06
         (1322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    27   0.35 
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   9.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   9.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   10.0 

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 27.1 bits (57), Expect(2) = 0.35
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P     L    PPPPPPP
Sbjct: 71   PPPPPLISILQQAPPPPPPPP 91



 Score = 25.0 bits (52), Expect(2) = 0.35
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 1001 PPPPPPPXXK 972
            PPPPPPP  K
Sbjct: 87   PPPPPPPTLK 96



 Score = 24.6 bits (51), Expect(2) = 2.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P     +    PPPPPPP
Sbjct: 70   PPPPPPLISILQQAPPPPPPP 90



 Score = 24.2 bits (50), Expect(2) = 2.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 1001 PPPPPPPXXKK 969
            PPPPPPP   K
Sbjct: 86   PPPPPPPPTLK 96


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical protein
            W03B1.9 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPPXXKKXK 963
            P  P   G +    PPPPPPP  ++ +
Sbjct: 432  PAPPLQVGLVGRVPPPPPPPPPRRRSR 458


>U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical protein
            W03B1.5 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPPXXKKXK 963
            P  P   G +    PPPPPPP  ++ +
Sbjct: 380  PAPPLQVGLVGRVPPPPPPPPPRRRSR 406


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 25.4 bits (53), Expect(2) = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P     +    PPPPPPP
Sbjct: 745  PPPPGGLPPISGGPPPPPPPP 765



 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 1001 PPPPPPPXXK 972
            PPPPPP   K
Sbjct: 772  PPPPPPGGFK 781


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 25.4 bits (53), Expect(2) = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P     +    PPPPPPP
Sbjct: 745  PPPPGGLPPISGGPPPPPPPP 765



 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 1001 PPPPPPPXXK 972
            PPPPPP   K
Sbjct: 772  PPPPPPGGFK 781


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.4 bits (53), Expect(2) = 10.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 1043 PXXPXXXGXLXXXXPPPPPPP 981
            P  P     +    PPPPPPP
Sbjct: 328  PPPPGGLPPISGGPPPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 10.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 1001 PPPPPPPXXK 972
            PPPPPP   K
Sbjct: 355  PPPPPPGGFK 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,299
Number of Sequences: 27780
Number of extensions: 263261
Number of successful extensions: 2478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3704777368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)