Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_H03
(1370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 37 0.032
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 36 0.075
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 34 0.23
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.30
03_01_0515 - 3864796-3865425 31 2.1
07_03_1136 + 24218601-24218734,24218769-24219906 31 2.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.7
11_06_0610 - 25449085-25453284 30 4.9
09_03_0145 - 12749288-12751510 29 6.5
07_01_0479 + 3606663-3607448 29 8.6
06_01_0486 - 3455030-3455770 29 8.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 8.6
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 29 8.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 37.1 bits (82), Expect = 0.032
Identities = 36/155 (23%), Positives = 40/155 (25%), Gaps = 2/155 (1%)
Frame = -1
Query: 947 PRXRXPPXGLTGGXXXXHPP--PXGGXXXXXGKPXPXGXXXXPPXPQGXXGXXFPLTXXV 774
P+ G+ GG PP P G P G PP P P +
Sbjct: 1068 PQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPI 1127
Query: 773 GTXXGPXGXFXGEXPGXXXXPXGFPPXKXXXNFFXXXXGGGXXGKNPPXXPFXGFGPFXA 594
G G P PP G G PP G P
Sbjct: 1128 GGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPP 1187
Query: 593 XXXKIFFXGXPPXXGXXXXPPLXXGKPXPPPXXPG 489
G PP PP+ G P PP PG
Sbjct: 1188 PPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPG 1222
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = -3
Query: 945 PXKXPPXXXNXGXFXX-PPPPXGGXPXPXXKTXPXGVXXXAPPXP 814
P PP G + PPPP G P P G+ PP P
Sbjct: 1082 PPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPP 1126
Score = 30.7 bits (66), Expect = 2.8
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = -1
Query: 644 GKNPPXXPFXGFGPFXAXXXKIFFXGXPPXXGXXXXPPLXXGKPXPPPXXPGPXXYXGGX 465
G PP P G G A F G P PP G PPP P GG
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTP-------PPNAHGGVAPPPPPPRGHGGVGGP 1198
Query: 464 XXGPQKPNPXXP 429
P P P P
Sbjct: 1199 PTPPGAPAPPMP 1210
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 35.9 bits (79), Expect = 0.075
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 563 PPXXGXXXXPPLXXGKPXPPPXXPGPXXYXGGXXXGPQ-KPNPXXP 429
PP G PP KP P P PGP GP+ KP P P
Sbjct: 180 PPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQP 225
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/65 (32%), Positives = 21/65 (32%)
Frame = -1
Query: 560 PXXGXXXXPPLXXGKPXPPPXXPGPXXYXGGXXXGPQKPNPXXPXVGXXFXPXKXSXXXP 381
P G PP KP PP PGP GP KP P P G P P
Sbjct: 172 PKPGPKPKPPKPGPKPKPP--KPGPKPKPKPPKPGP-KPKPKPPKPGPKPKPGPPQPWWP 228
Query: 380 XXXKK 366
K
Sbjct: 229 IPFPK 233
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 34.3 bits (75), Expect = 0.23
Identities = 22/88 (25%), Positives = 24/88 (27%)
Frame = -3
Query: 1083 GPPPXXXXXPPPXTPXLXXPXXXXXXXXGGKNFFFSXXGXPKXXFXPXKXPPXXXNXGXF 904
G PP PPP P P G P+ + P PP
Sbjct: 46 GAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQ 105
Query: 903 XXPPPPXGGXPXPXXKTXPXGVXXXAPP 820
PPPP P P P PP
Sbjct: 106 PPPPPPPPPSPPPSAPPPPPPPPTQPPP 133
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.30
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = -1
Query: 563 PPXXGXXXXPPLXXGKPXPPPXXPG--PXXYXGGXXXGPQKPNP 438
PP G PP P PPP P P GG GP P P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
Score = 29.9 bits (64), Expect = 4.9
Identities = 21/82 (25%), Positives = 22/82 (26%)
Frame = -1
Query: 1055 PPPXPXXXXXXXXXGXXPXGEKIFFFPXXGXXXQXXPRXRXPPXGLTGGXXXXHPPPXGG 876
PPP P P + P P PP G PPP GG
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 875 XXXXXGKPXPXGXXXXPPXPQG 810
P P G PP G
Sbjct: 373 KKGGPPPPPPKGGASRPPAAPG 394
Score = 29.5 bits (63), Expect = 6.5
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -3
Query: 945 PXKXPPXXXNXGXFXXPPPPXGGXPXPXXKTXPXGVXXXAPPXP 814
P PP PPPP P P K P PP P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Frame = -1
Query: 638 NPPXXPFXGFGPFXAXXXKIFFXGXPPXXGXXXXPP----LXXGKPXPPPXXPGPXXYXG 471
+PP P P A + PP G PP P PPP P P
Sbjct: 38 SPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAA 97
Query: 470 GXXXGPQKPNPXXP 429
P P P P
Sbjct: 98 SPPPPPPSPPPPSP 111
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/66 (31%), Positives = 21/66 (31%)
Frame = +3
Query: 750 PPGXXXXSXPXG*XKXXPXXPLGXGGXXXXPPGXXFSXXGXGPPPRGGVXXXXPPX*XXX 929
PPG P G P G GG PPG G PP GG P
Sbjct: 91 PPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAG-GGGGARPPAPGGGGGGGAPRRVLG 149
Query: 930 GGPXSG 947
GG G
Sbjct: 150 GGGGGG 155
Score = 29.9 bits (64), Expect = 4.9
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +2
Query: 815 GXGGAFXXTPXGXVFXXGXGXPP---XGGGGXXKXPXLXXXGGXFXGXXFXXGXP 970
G GGA P G G G P GGGG + P GG G G P
Sbjct: 164 GRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAP 218
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = -3
Query: 945 PXKXPPXXXNXGXFXXPPPPXGGXPXPXXKTXPXGVXXXAPPXP 814
P PP N F PPPP P P ++ PP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPP 591
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 4.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = -3
Query: 963 PKXXFXPXKXPPXXXNXGXFXXPPPPXGGXPXPXXKTXPXGVXXXAPPXPRXK 805
PK K PP + PP P G P P T P +PP P K
Sbjct: 608 PKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPP---SEKSPPTPESK 657
>09_03_0145 - 12749288-12751510
Length = 740
Score = 29.5 bits (63), Expect = 6.5
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -1
Query: 563 PPXXGXXXXPPLXXGKPXPPPXXPGPXXYXGGXXXGPQKPNPXXPXVGXXFXPXKXSXXX 384
PP G PP G P P P P GG PQ + P F P S
Sbjct: 34 PPPPGIQPPPPALPGMPHGRPPPPFP----GGRDAFPQAASTVVPDPARFFAPALLSSPL 89
Query: 383 P 381
P
Sbjct: 90 P 90
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 1317 PNPPPGFFXXGXPPXKKKKXFXXLFXGXXXXXXXKKPPPP 1198
P PPPG F G PP + + G PPPP
Sbjct: 201 PPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 8.6
Identities = 20/87 (22%), Positives = 24/87 (27%)
Frame = -3
Query: 1080 PPPXXXXXPPPXTPXLXXPXXXXXXXXGGKNFFFSXXGXPKXXFXPXKXPPXXXNXGXFX 901
P P PP TP P + P + P PP
Sbjct: 68 PSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPP 127
Query: 900 XPPPPXGGXPXPXXKTXPXGVXXXAPP 820
PP P P P + P V +PP
Sbjct: 128 TPPSPPPYVPPPTPPSPPPYVPPPSPP 154
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 551 GXXXXPPLXXGKPXPPPXXPGPXXYXGGXXXGPQKPNP 438
G PP P PPP P P G GP P P
Sbjct: 319 GAPPPPPAHPAAPAPPPPAPSPS--AAGAGSGPPPPPP 354
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 29.1 bits (62), Expect = 8.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 551 GXXXXPPLXXGKPXPPPXXPGPXXYXGGXXXGP 453
G PP G P PPP P P Y G P
Sbjct: 25 GFPVAPPPPMGPPPPPPMPPVPVMYLRGVPPPP 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,512,253
Number of Sequences: 37544
Number of extensions: 585646
Number of successful extensions: 1708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4329950544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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