Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_H01
         (1315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    96   8e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    95   2e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    92   2e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    28   3.3  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    27   4.3  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   5.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   7.6  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 96.3 bits (229), Expect = 8e-21
 Identities = 40/69 (57%), Positives = 60/69 (86%)
 Frame = +3

Query: 117 MRYVAAYLLAVLGGKTTPAAXDVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 296
           M+Y+AAYLL  +GGK +P+A D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 297 KLSSMPVGG 323
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 41/69 (59%), Positives = 60/69 (86%)
 Frame = +3

Query: 117 MRYVAAYLLAVLGGKTTPAAXDVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 296
           M+Y+AAYLL  +GGK +P+A D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 297 KLSSMPVGG 323
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 38/69 (55%), Positives = 60/69 (86%)
 Frame = +3

Query: 117 MRYVAAYLLAVLGGKTTPAAXDVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 296
           M+Y+AAYLL  +GGK +P+A D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 297 KLSSMPVGG 323
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -1

Query: 253 SSVITFLSFSASASIP--TELRIFSTSXAAGVVLPPSTASKYAAT 125
           SSV T LS SAS+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 301 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSXAAGVVLPPSTA 143
           SF  P+A +   S P+SS+ +F + SA+++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 10  DSYREFFRFPSXYRRLFKTNVILSALHVSCQLGLKKCVTWPR 135
           D +R    +P+   +L   NVILS+ +VSC   ++ C+   R
Sbjct: 217 DYFRIILHYPAKGNKL-PINVILSSTNVSCGCEMRFCIKGTR 257


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 268 TSLPLSSVITFLSFSASASIPTELRIFSTSXAAGVVLPPSTASKY 134
           + L + S  T +S S+  S+PT+  +  T   +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 268 TSLPLSSVITFLSFSASASIPTELRIFSTSXAAGVVLPPSTASKYAAT 125
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,417
Number of Sequences: 5004
Number of extensions: 24285
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)