Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G24
         (1313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    85   3e-17
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    83   8e-17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   7.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/81 (46%), Positives = 59/81 (72%)
 Frame = +2

Query: 149 QQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 328
           +++WSKGKV+ K  +  +FDK   + + KEVP +K I+ +V+ +R+K+ GSLAR A+ +L
Sbjct: 4   KKKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDL 63

Query: 329 REKGLIKQVVQHHGQVIYTRA 391
            E+G+I++V QH  Q IYTRA
Sbjct: 64  AERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 83.0 bits (196), Expect = 8e-17
 Identities = 37/80 (46%), Positives = 58/80 (72%)
 Frame = +2

Query: 149 QQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 328
           +++WSKGKV+ K  +  +FDK   + + KEVP +K I+ +V+ +R+K+ GSLAR A+ +L
Sbjct: 4   KKKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDL 63

Query: 329 REKGLIKQVVQHHGQVIYTR 388
            E+G+I++V QH  Q IYTR
Sbjct: 64  AERGVIQKVDQHSKQAIYTR 83


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 835 PXPPXXXXXXXXXXXPPPPPXXXKKKK 755
           P PP           PPPPP   KK+K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 836 PXXPXXXXXXXXXXXPPPPPPXXXKKKK 753
           P  P           PPPPPP   KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 146 SQQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLI 259
           ++  W+ G+V    +NQ L  KP Y   Y + P  KLI
Sbjct: 420 TEVSWTLGQVLLYASNQQLLAKPEYANYYMD-PYGKLI 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,511
Number of Sequences: 5004
Number of extensions: 27703
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)