Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G24
(1313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 107 2e-23
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 107 3e-23
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 70 4e-12
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 32 1.2
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 30 3.5
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 30 4.7
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 30 4.7
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 29 6.2
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 107 bits (257), Expect = 2e-23
Identities = 49/85 (57%), Positives = 66/85 (77%)
Frame = +2
Query: 140 KPSQQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRAL 319
K +++WSKGK + K+NN VLFD+ TY+ L EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 22 KQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAM 81
Query: 320 IELREKGLIKQVVQHHGQVIYTRAT 394
+L ++GLI+ V H Q IYTRAT
Sbjct: 82 KDLMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 107 bits (256), Expect = 3e-23
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +2
Query: 140 KPSQQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRAL 319
K +++WSKGK + K+NN VLFD+ TY+ L EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 22 KQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAI 81
Query: 320 IELREKGLIKQVVQHHGQVIYTRAT 394
+L +GLI+ V H Q IYTRAT
Sbjct: 82 NDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 70.1 bits (164), Expect = 4e-12
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +2
Query: 140 KPSQQQWSKGKVRXKLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLK 289
K +++WSKGK + K+NN VLFDK TY+ L EVP+YK ITP+V+SERL+
Sbjct: 956 KQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 290 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 394
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 257 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 403
+TPAV E+ + + AR+ L + RE I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 30.3 bits (65), Expect = 3.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 257 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 403
ITPAV E+ + + A++ L + RE+ I+ +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 232 VQXLICGFIKQHLVVQLXTNFXFGPLLLTWLCRHRXL 122
VQ ++ GFI+ H TNF G L W+C R L
Sbjct: 315 VQLVLVGFIELHDAFFHSTNFNDGALTYRWICICRRL 351
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +2
Query: 254 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 403
++TPA E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 29.5 bits (63), Expect = 6.2
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 254 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 403
+ITPA+ E+ + + A++ + + RE+ +I+ +Q + Q+++ K D
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLD 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,401
Number of Sequences: 37544
Number of extensions: 293235
Number of successful extensions: 3505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3271
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -