Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G23
(1226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 187 1e-47
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 90 3e-18
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 30 2.9
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 30 2.9
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 2.9
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 29 6.7
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 29 8.9
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 29 8.9
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 187 bits (456), Expect = 1e-47
Identities = 92/201 (45%), Positives = 127/201 (63%), Gaps = 1/201 (0%)
Frame = +3
Query: 111 KGNNMIPNGHFHKDWQXFVKTWXNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 290
+GN M+ N HF K W +KTW +QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 291 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 470
RY+TK R GRGF+L+E++AAG++ ARTIGIAVD RR NK+ E L+ N R+KEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 471 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 647
LILFP K KG+++ EE K+A QLRG ++P+ R +T+ E+ + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
Query: 648 GARSIAKLVGIRAKRLKDAAE 710
R+ K G R KR ++AAE
Sbjct: 184 KERADKKYRGKREKRAREAAE 204
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 90.2 bits (214), Expect = 3e-18
Identities = 40/84 (47%), Positives = 52/84 (61%)
Frame = +3
Query: 111 KGNNMIPNGHFHKDWQXFVKTWXNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 290
+GN M+ N HF K W +KTW +QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 291 VRYHTKVRAGRGFTLREIRAAGLN 362
RY+TK R GRGF+L+E++AA N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 474 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 629
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 474 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 629
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 474 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 629
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 29.1 bits (62), Expect = 6.7
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 483 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 659
PKGKK K ++ E+++ + R PV+ + EDEK + + ++
Sbjct: 43 PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102
Query: 660 IAKLVGIRAKRLKDAAENPDDVTK 731
K G + K K + PD K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 635 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 504
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 635 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 504
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,124,329
Number of Sequences: 27780
Number of extensions: 362358
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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