Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G22
(1330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.017
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.086
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.089
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.83
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 2.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 3.3
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 4.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.1 bits (82), Expect = 0.005
Identities = 24/72 (33%), Positives = 24/72 (33%)
Frame = +1
Query: 457 GGXGGGFGXXFXGPPPXXXXXXXXXXXXXXXXXXXXXXXXXQXIGGXXGGXXGGXXGXGG 636
GG GGFG GPPP GG GG GG G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG----GFGGGPGGFEGGPGGFGG 242
Query: 637 GXRGXXGXWGXF 672
G G G G F
Sbjct: 243 GPGGFGGGLGGF 254
Score = 34.3 bits (75), Expect = 0.038
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 569 GGXPKXLGGXXGGXXGGXGAXGGGXXXXXGXG 664
GG P GG GG GG G GGG G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 572 GXPKXLGGXXGGXXGGXGAXGGGXXXXXG 658
G P GG GG GG G GGG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 569 GGXPKXLGGXXGGXXGGXGAXGGGXXXXXG 658
GG P G GG GG G GGG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 1179 GXPGGGXXPPGXXGGFXGXXXXXXKXXXXXGFXXLGGXXGG 1301
G GG PP GGF G + G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 570 GGXPXDWGXXGGXXXGXXGPGGGGXXXXGGLGXF 671
GG G GG G G GGG GGLG F
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 589 GGXXGGXXGGXXGXGGGXRGXXGXWG 666
GG GG GG G GGG G G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 28.3 bits (60), Expect = 2.5
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 990 GXPXGGXPPXXXFXPG-GXXGGXXXXXGGGXXXXXXXXXXGGGXXXPXXGXXPRGXAXFX 1166
G GG PP G G GG GG GG G P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGPGGFGGGL 251
Query: 1167 XXRXGXPGGGXXPPGXXGG 1223
G PGG PG GG
Sbjct: 252 GGFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +3
Query: 1179 GXPGGGXXPPGXXGGFXGXXXXXXKXXXXXGF-XXLGGXXGGXPXXGXG 1322
G GG PG GGF G GF GG GG G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.017
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = -3
Query: 494 PXKXXPKPPPXPPXGGXXXXGXXNPPPPPPXPAXXXRG 381
P P PPP PP G PPPPPP PA G
Sbjct: 756 PIMGGPPPPPPPP----GVAGAGPPPPPPPPPAVSAGG 789
Score = 33.5 bits (73), Expect = 0.067
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = -3
Query: 479 PKPPPXPPXGGXXXXGXXNPPPPPPXPAXXXRGXXXXXXXPXXXQXGXKKPXAGXQHXEX 300
P PPP P GG PPPPPP P G P G + A E
Sbjct: 750 PVPPPAPIMGG--------PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Query: 299 PP 294
P
Sbjct: 802 EP 803
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 493 PGXXXQNPPPXPXXXVXXXXAXKTPPPPPP 404
P PPP P PPPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect(2) = 0.086
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -3
Query: 470 PPXPPXGGXXXXGXXNPPPPPPXP 399
PP NPPPPPP P
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196
Score = 25.0 bits (52), Expect(2) = 0.086
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 422 PPPPPPXPA 396
PPPPPP PA
Sbjct: 190 PPPPPPPPA 198
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.089
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 669 TXPXPXXXXXPPPXAPXPPXXPPXXPPNXL 580
T P P PPP AP P PP PP L
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -1
Query: 502 GGAPGXXXQNPPPXPXXXVXXXXAXKTPPPPP 407
G AP PP P + TPPPPP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPP 1711
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/46 (28%), Positives = 13/46 (28%)
Frame = -2
Query: 1284 PKXKXPXXPXFXGXXXXPPKXPPPXPGXXXPPXXXPPFXXXXPXXP 1147
P P P PPP P PP PP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 473 PPPXPPXGGXXXXGXXNPPPPP 408
PPP PP G PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 656 PXXPRXPPPXPXX-PPXXPPXXPP 588
P P PPP P PP PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 475 NPPPXPXXXVXXXXAXKTPPPPP 407
NPPP P + PPPPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 664 PXPPXXXXPPPPGPXSPXXXPPXXPQSF 581
P PP PPPPG P PP P +
Sbjct: 9 PPPP----PPPPGFEPPSQPPPPPPPGY 32
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 479 PKPPPXPPXGGXXXXGXXNPPPPPPXPAXXXRG 381
P PPP PPPPP P+ RG
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRG 323
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 494 PXKXXPKPPPXPPXGGXXXXGXXNPPPPPPXP 399
P P PPP PP N PP P P
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/118 (21%), Positives = 27/118 (22%), Gaps = 3/118 (2%)
Frame = -2
Query: 1233 PPKXPPPXPGXXXPPXXXPPFXXXXPXXPGGXXXXXGXXXPPXXGPXXXTXXPPPPK--X 1060
PP PPP P P P G PP + P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 1059 XXXXPXXPRXXTXXKGGXPPGEXXXXXPXKXPXGXXKRGXXXXXPGXXXXPP-PXGXP 889
P P + PP P P G PP P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Frame = -3
Query: 488 KXXPKPPPX-------PPXGGXXXXGXXNPPPPPP 405
K P PPP PP G PPPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Frame = -3
Query: 503 GGGPXKXXPKPPPXPPXGGXXXX------GXXNPPPPPPXPA 396
G G PPP PP G PPPPPP A
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/78 (24%), Positives = 19/78 (24%)
Frame = -2
Query: 1269 PXXPXFXGXXXXPPKXPPPXPGXXXPPXXXPPFXXXXPXXPGGXXXXXGXXXPPXXGPXX 1090
P P PP P G PP P P PP G
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP-LGNAS 410
Query: 1089 XTXXPPPPKXXXXXPXXP 1036
T PP P P P
Sbjct: 411 RTSTPPVPTPPSLPPSAP 428
Score = 26.2 bits (55), Expect(2) = 1.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -3
Query: 656 PXXPRXPPPXPXXPPXXPPXXPP 588
P P P P PP PP PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437
Score = 21.0 bits (42), Expect(2) = 1.6
Identities = 9/27 (33%), Positives = 9/27 (33%)
Frame = -3
Query: 479 PKPPPXPPXGGXXXXGXXNPPPPPPXP 399
P PP PP P PP P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLP 470
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 656 PXXPRXPPPXPXXPPXXPPXXPPI 585
P P PPP P P P PPI
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPI 167
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 647 PRXPPPXPXXPPXXPPXXPPI 585
P PP P PP P PPI
Sbjct: 140 PTSAPPRPSIPPPSPASAPPI 160
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 422 PPPPPPXPA 396
PPPPPP PA
Sbjct: 1095 PPPPPPPPA 1103
Score = 21.4 bits (43), Expect(2) = 2.5
Identities = 8/22 (36%), Positives = 8/22 (36%)
Frame = -3
Query: 470 PPXPPXGGXXXXGXXNPPPPPP 405
P P PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPP 1101
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 458 PXGGXXXXGXXNPPPPPPXPA 396
P G G PPPPPP P+
Sbjct: 295 PSSGDSANGGLPPPPPPPPPS 315
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 727 GGPPGGXPXKXXXXPPRGPPXGAXXG 804
GG PGG P P G P GA G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNG 637
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.160 0.569
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,708
Number of Sequences: 5004
Number of extensions: 41780
Number of successful extensions: 321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -