Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G19
         (1354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 562 PXPXPRGXXXXXXPXXPPPPP 500
           P P P G      P  PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 562 PXPXPRGXXXXXXPXXPPPPPP 497
           P P P        P  PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 514 PPPPPPXP 491
           PPPPPP P
Sbjct: 761 PPPPPPPP 768



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 562 PXPXPRGXXXXXXPXXPPPPPP 497
           P P P           PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,430
Number of Sequences: 5004
Number of extensions: 17215
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)