Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G16
(1356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 42 2e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.017
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.039
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.039
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.091
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.091
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 41.9 bits (94), Expect = 2e-04
Identities = 38/152 (25%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Frame = -1
Query: 1338 PXPPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPX 1159
P P P P P P PP + + P P P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP---PVPKPSVAAPPV 1133
Query: 1158 XXSPPPXXQPXXPXPXXXXXPXXXPX---PXXXPXTXXXPXP-PXXPXPXPPXXPPXXXP 991
P P P P P P P P P P P P P P P
Sbjct: 1134 ---PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 990 XXPHSXXLXPPXXHXXXPPXPPXXSX-PTPPP 898
P S P PP PP + P P P
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 39.5 bits (88), Expect = 0.001
Identities = 41/184 (22%), Positives = 47/184 (25%), Gaps = 9/184 (4%)
Frame = -1
Query: 1332 PPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPXXX 1153
P S P P P + P + +P P P P P
Sbjct: 982 PTSEPPKDHPPSA-PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTA 1040
Query: 1152 SPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSX 973
P P P P P P P + P P PP P P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA--PSGAPPVPAPSGIPPVPKPS 1098
Query: 972 XLXP--PXXHXXXPPXP-PXXSXPTP------PPXXXXXXTXXLHLPXXPXHXXPXXSXX 820
P P PP P P + P P PP + P P S
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 819 PPXP 808
PP P
Sbjct: 1159 PPVP 1162
Score = 33.1 bits (72), Expect = 0.091
Identities = 27/145 (18%), Positives = 33/145 (22%)
Frame = -1
Query: 1332 PPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPXXX 1153
P + P P P + PP + + P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG-IPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 1152 SPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSX 973
PP +P P P P P P P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 972 XLXPPXXHXXXPPXPPXXSXPTPPP 898
P P PP + P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 31.9 bits (69), Expect = 0.21
Identities = 28/147 (19%), Positives = 32/147 (21%)
Frame = -1
Query: 1338 PXPPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPX 1159
P P P P P + PP + P P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 1158 XXSPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPH 979
PP +P P P P P P P P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR 1253
Query: 978 SXXLXPPXXHXXXPPXPPXXSXPTPPP 898
S P H P P S + P
Sbjct: 1254 SSV---PSPHSNASPSPTSSSMASAAP 1277
Score = 27.5 bits (58), Expect = 4.5
Identities = 23/104 (22%), Positives = 24/104 (23%), Gaps = 2/104 (1%)
Frame = -2
Query: 1097 PXPXXXPXXXXXPXXPPXXXXXPPPXPXXXPXXXXPXXPIPTXXXPXXXTXXXPPXH--X 924
P P P P P P P P P P P P P
Sbjct: 1063 PPPVPAPSSEI-PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Query: 923 PXPXPXXPXSXXXXPXXXFTFPXXXXTXPXXPXXXPLXPXPXPT 792
P P P P P P P P P P+
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS 1165
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.017
Identities = 27/118 (22%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
Frame = -1
Query: 1146 PPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSXXL 967
PP + P P P P + PP P P P P S
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 966 XPP-XXHXXXPPXPPXXSXPTPPPXXXXXXTXXLHLPXXPXHXXPXXSXXPPXPXTXP 796
PP PP P P+ PP LP P + P P P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 35.1 bits (77), Expect = 0.023
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = -1
Query: 1152 SPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSX 973
S PP P P P T P PP P PP PP P P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTS--TPPVPTPPSLPPSAPPSLPPSAPPSLPMGA 443
Query: 972 XLXPPXXHXXXPPXPPXXSXPTPPP 898
PP P P PP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 35.1 bits (77), Expect = 0.023
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = -1
Query: 1086 PXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSXXLXP-PXXHXXXPPXPPXXSXP 910
P P P + PP P P P P P P + P P PP PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Query: 909 TPPP 898
P P
Sbjct: 477 PPAP 480
Score = 29.9 bits (64), Expect = 0.85
Identities = 28/138 (20%), Positives = 30/138 (21%), Gaps = 1/138 (0%)
Frame = -1
Query: 1338 PXPPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPX 1159
P PP P PP P P P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 1158 XXSPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXP-PXXPPXXXPXXP 982
+PP P P P P P PP P P P P P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 981 HSXXLXPPXXHXXXPPXP 928
+ PP P P
Sbjct: 472 AAP--APPPAPAPAPAAP 487
Score = 29.1 bits (62), Expect = 1.5
Identities = 35/153 (22%), Positives = 40/153 (26%), Gaps = 6/153 (3%)
Frame = -1
Query: 1338 PXPPSXPXXXXPXXXXPXTXPXNXT-PPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXP 1162
P PPS P P + P PP T P P P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR--PIAPVSMNPAINSTS 288
Query: 1161 XXXSPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXP 982
PPP + P P P PP PP P
Sbjct: 289 KPPLPPPSSRVSAAA---LAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345
Query: 981 HSXXLXP-PXXHXXXPPXPPXXSXPT----PPP 898
++ P P PP PP S P+ PPP
Sbjct: 346 NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 7.9
Identities = 31/149 (20%), Positives = 33/149 (22%), Gaps = 3/149 (2%)
Frame = -1
Query: 1338 PXPPSXPXXXXPXXXXPXTXPXNXTPPXXXXTXXLXPXXXXXXXPXXXPXXXPXXXXXPX 1159
P P S P + P P T P P P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 1158 XXSPPPXXQPXXPXPXXXXXPXXXPX-PXXXPXTXXXPXPPXXPX--PXPPXXPPXXXPX 988
PP P P P P P + P P P PP P P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPP 458
Query: 987 XPHSXXLXPPXXHXXXPPXPPXXSXPTPP 901
P PP P P P P
Sbjct: 459 LPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.039
Identities = 28/85 (32%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = +2
Query: 899 GGGVGXXXXG--GWGGXXXWXXGGXXXXEWGXXGXXXGGXXGGXGXGXXGGXGXXXVXGX 1072
GGG G G G+GG + G G G GG GG G G GG G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG-GFGGGPG-----GF 247
Query: 1073 XXGXGXXXGXXXXXGXGXXGXXXGG 1147
G G G G G G G
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 30.3 bits (65), Expect = 0.64
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 1147 GGXGGGXGGGXXGGXGXXGGXGXXXXXGXEG--XGGXXXXXGXVVGXXXXXXXXWGXXXG 1320
GG GG GGG G GG G G EG GG G G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 1321 XG 1326
G
Sbjct: 247 FG 248
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.039
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = -1
Query: 1152 SPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXP-PXXPXPXPPXXPPXXXPXXPHS 976
+PP P P P P P + P P P P PP P P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 975 XXLXPPXXHXXXPPXPPXXSXPTPPP 898
P PP PP PPP
Sbjct: 183 SPPSAPSLPSAVPPMPPK---VPPPP 205
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/81 (27%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Frame = -3
Query: 1165 PXXPIPPPXXXTXXPPPXXXPXP--XXXSXXXXXXXXXXXPP-PXXXXXPXXPXXPPXXX 995
P P PP PP P P S PP P P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 994 PPXXPFXXXXPPXXPXXXPPP 932
P PP P PPP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/77 (23%), Positives = 21/77 (27%)
Frame = -1
Query: 1164 PXXXSPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXX 985
P +P +P P P P + P P P P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 984 PHSXXLXPPXXHXXXPP 934
P PP PP
Sbjct: 188 PSLPSAVPPMPPKVPPP 204
Score = 31.1 bits (67), Expect = 0.37
Identities = 20/81 (24%), Positives = 20/81 (24%)
Frame = -1
Query: 1050 PXPPXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXPPXPPXXSXPTPPPXXXXXXTXX 871
P P P P PP P P P PP S PP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 870 LHLPXXPXHXXPXXSXXPPXP 808
P P P PP P
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/78 (24%), Positives = 20/78 (25%)
Frame = -1
Query: 1182 PXXXXXPXXXSPPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXPXPXPPXXPP 1003
P P S P P P P P + P PP P P P
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211
Query: 1002 XXXPXXPHSXXLXPPXXH 949
P S PP H
Sbjct: 212 ANTSSRPSS--FAPPAGH 227
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.1 bits (72), Expect = 0.091
Identities = 35/134 (26%), Positives = 37/134 (27%), Gaps = 11/134 (8%)
Frame = -1
Query: 1182 PXXXXXPXXXSPPPXX--QPXX--PXPXXXXXPXXX--PXPXXXPXTXXXPXPPXXPXPX 1021
P P PPP +P P P P P P P PP P
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269
Query: 1020 PPXXPPXXXPXXPHSXXLXPPXXHXXXP--PXPPXXSXP---TPPPXXXXXXTXXLHLPX 856
PP P PP H P PP P PPP H+P
Sbjct: 270 EHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE--HMPP 326
Query: 855 XPXHXXPXXSXXPP 814
P H P PP
Sbjct: 327 PPMHHEPGEHMPPP 340
Score = 31.5 bits (68), Expect = 0.28
Identities = 26/96 (27%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Frame = -1
Query: 1086 PXPXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXP--PXPPXXSX 913
P P P PP P PP P PP H P PP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 912 P---TPPPXXXXXXTXXLHLPXXPXHXXPXXSXXPP 814
P PPP H+P P H P PP
Sbjct: 268 PGEHMPPPPMHHEPGE--HMPPPPMHHEPGEHMPPP 301
Score = 30.3 bits (65), Expect = 0.64
Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Frame = -1
Query: 1050 PXPPXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXP--PXPPXXSXP---TPPPXXXX 886
P PP P PP P PP H P PP P PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMH-HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 266
Query: 885 XXTXXLHLPXXPXHXXPXXSXXPP 814
H+P P H P PP
Sbjct: 267 EPGE--HMPPPPMHHEPGEHMPPP 288
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.1 bits (72), Expect = 0.091
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +1
Query: 1144 GGGXGGGXGGGXXGGXGXXGGXGXXXXXGXEGXGGXXXXXG 1266
GGG GG GGG G G GG G GG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
Score = 31.1 bits (67), Expect = 0.37
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 1147 GGXGGGXGGGXXGGXGXXGGXGXXXXXGXEGXGGXXXXXGXVVG 1278
GG GGG GG GG G G G GG G G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -1
Query: 1080 PXXXPXTXXXPXPPXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXPPXPPXXSXPTPP 901
P P P P P P PP P P P PP PP PP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPP----PPPP 783
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Frame = -1
Query: 1149 PPPXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPXPPXXP-----XPXPPXXPP 1003
PPP P P P P P P P PP P P PP PP
Sbjct: 733 PPPPPAVIVPTP----APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 1044 PPXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXPPXPPXXSXPTPP 901
PP P PP PP P P + + P PP P S P+ P
Sbjct: 1699 PPQMSAPTPPP-PPMSVPPPPSAPPM-PAGPPSAPPPPLPASSAPSVP 1744
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -1
Query: 1041 PXXPXPXPPXXPPXXXPXXPHSXXLXPPXXHXXXPPXPPXXSXPTPPP 898
P P PP P P P PP PP P P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAP--PQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = -1
Query: 1143 PXXQPXXPXPXXXXXPXXXPXPXXXPXTXXXPX-PPXXPXPXPPXXPPXXXPXXPH 979
P +P P P P P P P P P PP P P P+
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 1009 PPXXXPPXXPFXXXXPPXXPXXXPPP 932
PP PP P PP P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,250
Number of Sequences: 5004
Number of extensions: 23842
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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