Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G15
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   2.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 475 GFECIHSECDQGIVPRFLTEIFHKLNQMSER 567
           GF  I S      + + L E+F + +Q+SER
Sbjct: 281 GFTAISSTYSASELVKILNELFARFDQLSER 311


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 444 LTLTKHNNRCITAIEETVYLRYHKRIEQMSLT 349
           LT  +HNN C+T I  T   + H R    SL+
Sbjct: 291 LTTIQHNN-CLTRIPSTRINKQHTRGNNFSLS 321


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 309 STFRNNNLGYRITEYALSRICQARGLQTNGDLYWNI 202
           S ++ NN+ Y+  E  L     A+G+  NG L++ +
Sbjct: 284 SQYQANNVHYQGKENILWTQASAKGISDNGVLFFGL 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,161
Number of Sequences: 438
Number of extensions: 6787
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)