Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G14
(1379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.030
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.040
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.053
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.21
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 6.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 9.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.010
Identities = 26/97 (26%), Positives = 30/97 (30%)
Frame = +1
Query: 670 PXPPPXXKKKKXPFXXGXTPAXTXKXXXXPPEKXPXXXPFXTGAXXPXXXPXXPXGXGGX 849
P PPP ++ + G P P P G+ P P G
Sbjct: 312 PPPPPPSRRNR-----GKPPIGNGSSNSSLPPPPPPPRSNAAGSI-----PLPPQGRSAP 361
Query: 850 XPPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHPXXGG 960
PPPP P G PPP PP P P G
Sbjct: 362 PPPPPR-SAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Score = 31.9 bits (69), Expect = 0.21
Identities = 26/97 (26%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Frame = +1
Query: 670 PXPPPXXKKKKXPFXXGXTPAXTXKXXXXPP-EKXPXXXPFXTGAXXPXXXPXXPXGXGG 846
P PPP + P P PP P P + P P P G
Sbjct: 389 PAPPPAIPGRSAP---ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 847 XXPPPP--XXXXPXPGXAP-PPPXGGXXXKXPPXPHP 948
P PP P P P PP PP P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +1
Query: 853 PPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHP---XXGGXXPXNXRXXGAXPXXXXKNXP 1023
PPPP PP G PP P P G P + A P ++ P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 1024 PXXR 1035
R
Sbjct: 371 STGR 374
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 853 PPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHPXXGGXXP 969
PPPP G P PP G PP G P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.030
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 829 PXGXGGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP 942
P PPPP P P APP P G PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.040
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +1
Query: 853 PPPPXXXXPXPGXAP---PPPXGGXXXKXPPXPHPXXGGXXP 969
PPPP P P AP PPP PP P P G P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 33.5 bits (73), Expect = 0.070
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 760 PEKXPXXXPFXTGAXXPXXXPXXPXGXGGXXPPPPXXXXPXPGXAPPPP 906
P P T A P P GG PPPP G PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +2
Query: 758 PPKXNPXAXLFXPGRXXXXXXPXXPXGXGGXSPPPPXXGXQX--PVRPXPPPXGV 916
PP P + P P P GG PPPP G P P PPP V
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI-MGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 757 PPEKXPXXXPFXTGAXXPXXXPXXPXGXGGXXPPPPXXXXPXPGXAPPPP 906
PP P A P P G PPPP P PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 853 PPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHP 948
PP P P P PPPP G PP P P
Sbjct: 753 PPAPIMGGPPP---PPPPPGVAGAGPPPPPPP 781
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 856 PPPXXXXPXPGXAPPPPXGGXXXKXPPXPHP 948
PPP P PPPP PP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +1
Query: 853 PPPPXXXXPXP---GXAPPPPXGGXXXKXPPXPHP 948
P P P P G PPPP G PP P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 24.6 bits (51), Expect(2) = 3.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -2
Query: 415 PPPPPPXXXXKXXPXXXPXP 356
PPPPPP P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 21.4 bits (43), Expect(2) = 3.3
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -2
Query: 418 TPPPPPP 398
+PPPPPP
Sbjct: 731 SPPPPPP 737
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.053
Identities = 31/113 (27%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Frame = +2
Query: 671 PXPPPXKKKKXPPXXGGXPPXALKKXXGXPPKXNPXAXLFXPGRXXXXXXPXXPXGXGGX 850
P P P + P G PP + G PP P P P P G
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPP--VPAPSGIPPVPKPSVAA-PPVPKPSVAVPPVPAPSG-- 1119
Query: 851 SPPPPXXGXQXPVRPXP---PPXGVXX*XXPPXPTQXGGGFXPKTXGXXXPXP 1000
+PP P P P P PP PP P G PK P P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +1
Query: 856 PPPXXXXPXPGXAPPPPXGGXXXKXPPXPHPXXGGXXPXNXRXXGAXPXXXXKNXPP 1026
P P P PP P P P P P GA P PP
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = +1
Query: 820 PXXPXGXGGXX-PPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHPXXGGXXPXNXRXXGAX 996
P P G P P P P + PP PP P P G P G
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP-SSGIPPVPKPAAGVP 1189
Query: 997 PXXXXKNXPP 1026
P PP
Sbjct: 1190 PVPPPSEAPP 1199
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 808 PXXXPXXPXGXGGXXP-PPPXXXXPXPGX-APPPPXGGXXXKXPPXPHP 948
P P P G P PPP P P A PP K PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 6.1
Identities = 26/110 (23%), Positives = 28/110 (25%)
Frame = +2
Query: 671 PXPPPXKKKKXPPXXGGXPPXALKKXXGXPPKXNPXAXLFXPGRXXXXXXPXXPXGXGGX 850
P P + P PP L P P P P G
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPI---PVPSTAPPVPIPTSTPPVPKSSSGAP 1060
Query: 851 SPPPPXXGXQXPVRPXPPPXGVXX*XXPPXPTQXGGGFXPKTXGXXXPXP 1000
S PPP + P P G PP P G PK P P
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGA-----PPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 26.6 bits (56), Expect = 8.1
Identities = 25/118 (21%), Positives = 26/118 (22%)
Frame = +1
Query: 670 PXPPPXXKKKKXPFXXGXTPAXTXKXXXXPPEKXPXXXPFXTGAXXPXXXPXXPXGXGGX 849
P P P P G P PP P P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 850 XPPPPXXXXPXPGXAPPPPXGGXXXKXPPXPHPXXGGXXPXNXRXXGAXPXXXXKNXP 1023
P P P P + PP PP P P P P K P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.21
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 842 GGXSPPPPXXGXQXPVRPXPPP 907
G PPPP G + P +P PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 829 PXGXGGXXPPPPXXXXPXPGXAPPPP 906
P G PPPP P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/79 (24%), Positives = 23/79 (29%)
Frame = +1
Query: 670 PXPPPXXKKKKXPFXXGXTPAXTXKXXXXPPEKXPXXXPFXTGAXXPXXXPXXPXGXGGX 849
P PP + + P P+ P P P + P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPP-IPSKAPPIPSSLPPPAQPAAPVKSPPS 186
Query: 850 XPPPPXXXXPXPGXAPPPP 906
P P P P PPPP
Sbjct: 187 APSLPSAVPPMPPKVPPPP 205
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 820 PXXPXGXGGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPP 936
P P PP P P P PPP K PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 247
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 260
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 273
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 286
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 299
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 312
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 325
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP-HPXXGGXXP 969
G PPPP P PPP PP P H G P
Sbjct: 295 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 338
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 841 GGXXPPPPXXXXPXPGXAPPPPXGGXXXKXPPXP 942
G PPPP P PPP PP P
Sbjct: 308 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +1
Query: 670 PXPPPXXKKKKXPFXXGXTPAXTXKXXXXPPEKXPXXXP 786
P PPP + + G PA T P +K P P
Sbjct: 189 PVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAP 227
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 6.1
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = -1
Query: 950 FGWGXGGXFXXXPPXGGGGAXPGXGXXXXGGGGXXPPXPXGXXGXXXG 807
FG G GG F P GG G PG GG G P G G G
Sbjct: 226 FGGGPGG-FEGGP--GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = -1
Query: 884 GXGXXXXGGGGXXPPXPXGXXGXXXGXXAPVXKGXXXGXFSGG 756
G G GGG PP G G G G F GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -2
Query: 415 PPPPPPXXXXKXXPXXXP 362
PPPPPP P P
Sbjct: 371 PPPPPPPELLNHSPKSRP 388
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -2
Query: 418 TPPPPPP 398
+PPPPPP
Sbjct: 369 SPPPPPP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.152 0.532
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,352
Number of Sequences: 5004
Number of extensions: 30306
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 763076352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -