Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G11
         (1309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    52   1e-07
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    41   3e-04
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    39   0.002
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    36   0.016
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   3.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   5.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   7.6  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +3

Query: 195 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 287
           DR  KNG+ EYY+KW GY   DNTWEPE NL
Sbjct: 30  DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 189 VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 305
           +LD R+K      +YYLKW+GY D  DNTW + ED   C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 207 KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQ 308
           K G  EY LKW+GY D  DNTW  E D   C  LI+
Sbjct: 94  KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129



 Score = 30.3 bits (65), Expect = 0.61
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 561 PAKQANVRCPQVVIQFYEERLTW 629
           P+   N +CPQ ++QFYE  LT+
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +3

Query: 189 VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 287
           ++D ++ +NG ++ Y ++W  YS   +TWEP +NL
Sbjct: 13  IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 540 TDEADLVPAKQANVRCPQVVIQFYEE 617
           T+++ L PAKQ N + P+ + Q Y+E
Sbjct: 75  TEDSSLSPAKQENEKSPEGIEQKYQE 100


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 222 EYYLKWKGYSDEDNTWEPEDNL 287
           E+ +KW  +S    TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 207 KNGVLEYYLKWKGYSDEDNTWEPED 281
           + G  EY++KW+    ++ TWE  D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,113,107
Number of Sequences: 5004
Number of extensions: 72993
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)