Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G11
         (1309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    38   1e-04
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.12 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   7.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 38.3 bits (85), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 189 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 308
           +L ++   GV  Y +KWK +  + NTWEP  NL +C D+++
Sbjct: 249 ILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILE 289


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 598 TTCGHRTLACFAG-TRSASSVPCHFMRNMSSPLLS 497
           TTC   T+ CF G  R +    C  ++ +  P+LS
Sbjct: 290 TTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 632 VPCEPFFIKLNNYLWAPHI 576
           V C+  +  +NN+LW P I
Sbjct: 60  VVCDVAYNNVNNWLWTPFI 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 566 CWYKICFICSLP 531
           CW+KIC+  + P
Sbjct: 489 CWWKICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 566 CWYKICFICSLP 531
           CW+KIC+  + P
Sbjct: 542 CWWKICWTITTP 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,890
Number of Sequences: 438
Number of extensions: 4853
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45023625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)