Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G09
(1347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 4e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.090
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.36
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.9
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 28 3.4
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 5.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 40.7 bits (91), Expect = 4e-04
Identities = 35/139 (25%), Positives = 43/139 (30%), Gaps = 9/139 (6%)
Frame = +3
Query: 690 KKPXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPP-PXXPRGKGDTXXXXXXX 866
K+P PPP + R G + P PPP P P+G+ +
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR--SAPPPPPP 366
Query: 867 XXXXXAXXNPPPPKXXXXXKTPPXPPXG-XGXKPPXXPP-------GXRPVXKXXFSPXA 1022
PPP PP PP G P PP PV P +
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Query: 1023 PPPXXKXXXPPXGVPRGXP 1079
PP PP +P G P
Sbjct: 427 APPSLPPSAPP-SLPMGAP 444
Score = 35.5 bits (78), Expect = 0.017
Identities = 42/179 (23%), Positives = 49/179 (27%), Gaps = 4/179 (2%)
Frame = +2
Query: 503 PPXLPPAXRX-IAPXKGGXXXPPKPGXGAXKNXQXXGXKPAKNX*KGXXXXXPQPXNXPX 679
PP PP+ R A PP P + +N G P N P P P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNR---GKPPIGNG--SSNSSLPPPPPPPR 344
Query: 680 XSLKKTAPXPXXXXXXXXXXXXXXXXXXGPXXPP---GXPPXXPPGTPPX*XPGKRGHXX 850
+ + P P G PP PP PP PG+
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA-IPGRSAPAL 403
Query: 851 XXXXXXXXXXGXXXPXPPKXXXXXKNPPXPPPXXGPXTPPXSPRXPPRXKXKXFPXGPP 1027
P PP PP PP P P +P PP P PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSA--PPSLPPSAPPSLPMGAPAAPPLPPSA--PIAPP 458
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/100 (22%), Positives = 23/100 (23%)
Frame = +3
Query: 696 PXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPPXXPRGKGDTXXXXXXXXXX 875
P PPP G P PP P PP P +
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 876 XXAXXNPPPPKXXXXXKTPPXPPXGXGXKPPXXPPGXRPV 995
PP PP PP P P PV
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.090
Identities = 23/86 (26%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Frame = +2
Query: 776 PPGXPPXXPP-GTPPX*XPGKRGHXXXXXXXXXXXXGXXXPXPPKXXXXXKNPPXPPPXX 952
P G PP P G PP P PP PP P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 953 GPXTPPXSPRXPPRXKXKXFPXGPPP 1030
P P S PP P P P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 32.7 bits (71), Expect = 0.12
Identities = 29/124 (23%), Positives = 32/124 (25%)
Frame = +3
Query: 696 PXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPPXXPRGKGDTXXXXXXXXXX 875
P P P G P +P P P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 876 XXAXXNPPPPKXXXXXKTPPXPPXGXGXKPPXXPPGXRPVXKXXFSPXAPPPXXKXXXPP 1055
+ PP PK PP PP P G PV +P P P PP
Sbjct: 1173 APSSGIPPVPKPAAG--VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP--SAGLPP 1228
Query: 1056 XGVP 1067
VP
Sbjct: 1229 VPVP 1232
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/87 (26%), Positives = 23/87 (26%), Gaps = 2/87 (2%)
Frame = +2
Query: 776 PPGXPPXXPPGT--PPX*XPGKRGHXXXXXXXXXXXXGXXXPXPPKXXXXXKNPPXPPPX 949
P G PP P PP P PP PP PPP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 950 XGPXTPPXSPRXPPRXKXKXFPXGPPP 1030
P P S PP P P P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 32.3 bits (70), Expect = 0.16
Identities = 29/137 (21%), Positives = 32/137 (23%)
Frame = +3
Query: 657 PNXXTPPXXA*KKPXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPPXXPRGK 836
P+ PP A P P G P S PP P PP
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 837 GDTXXXXXXXXXXXXAXXNPPPPKXXXXXKTPPXPPXGXGXKPPXXPPGXRPVXKXXFSP 1016
P + PP P G PP PP P +
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAG 1225
Query: 1017 XAPPPXXKXXXPPXGVP 1067
P P PP P
Sbjct: 1226 LPPVPVPTAKAPPVPAP 1242
Score = 30.7 bits (66), Expect = 0.48
Identities = 36/176 (20%), Positives = 38/176 (21%), Gaps = 3/176 (1%)
Frame = +2
Query: 473 PPGXGGXXFXPPXLPPAXRXIAPXKGGXXXPPKPGX-GAXKNXQXXGXKPAKNX*KGXXX 649
P G PP +P I PP P G + P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 650 XXPQPXNXPXXSLKKTAPXPXXXXXXXXXXXXXXXXXXGPXXPPGXPPXXPPGT--PPX* 823
P P P A P P G PP P PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 824 XPGKRGHXXXXXXXXXXXXGXXXPXPPKXXXXXKNPPXPPPXXGPXTPPXSPRXPP 991
P PP PP PPP P P S PP
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 29.1 bits (62), Expect = 1.5
Identities = 31/125 (24%), Positives = 33/125 (26%), Gaps = 1/125 (0%)
Frame = +3
Query: 696 PXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPPXXPRGKGDTXXXXXXXXXX 875
P P P P G P AP PP P P P+
Sbjct: 1065 PVPAPSSEIPSIPAP-SGAPPVPAPSG--IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Query: 876 XXAXXNPPPPKXXXXXKTPPXPPXGXGXKPPXXPPGXRPVXKXXFSPXAPP-PXXKXXXP 1052
+ P PP P P P G PV K S APP P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP--SVAAPPVPAPSSGIP 1179
Query: 1053 PXGVP 1067
P P
Sbjct: 1180 PVPKP 1184
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +2
Query: 899 PPKXXXXXKNPPXPPPXXGPXTPPXSPRXPPRXKXKXFPXGPPP 1030
PP PP P P P P + P P PPP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Score = 27.5 bits (58), Expect = 4.5
Identities = 26/108 (24%), Positives = 27/108 (25%), Gaps = 4/108 (3%)
Frame = +3
Query: 768 PXSPQXPPPXXPXXPPPXXPRGKGDTXXXXXXXXXXXXAXXNPPP---PKXXXXXKTPPX 938
P PP P PP G P P P PP
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 939 PPXGXGXKPPXXPP-GXRPVXKXXFSPXAPPPXXKXXXPPXGVPRGXP 1079
P P P PV +P P P PP VP G P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP--SVAAPPVPVPSGAP 1140
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.36
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 894 PPPPKXXXXXKTPPXPPXGXGXKPPXXPPGXRPVXKXXFSPXAPPP 1031
PPP PP PP G PP PP V AP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Frame = +3
Query: 891 NPPPPKXXXXXKTP-----PXPPXG---XGXKPPXXPPGXRPVXKXXFSPXAPPP 1031
+PPPP TP P PP G PP PPG V P PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 486 PXPGGGPXXXXLLTXPXPPXLXXKKXPPPPPXP 388
P P P P PP + PPPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 893 PXPPKXXXXXKNPPXPPPXXGPXTPPXSPRXPP 991
P PP PP PPP P P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +2
Query: 923 KNPPXPPPXXGPXTPPXSPRXPPRXKXKXFPXGPPPGXKXXXPXXGGP 1066
K+PP PPP P +P P GPPP GP
Sbjct: 730 KSPPPPPP--AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.84
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +2
Query: 938 PPPXXGPXTPPXSPRXPPRXKXKXFPXGPPPGXKXXXPXXGGP 1066
PP P PP PP P GPP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +3
Query: 657 PNXXTPPXXA*KKPXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPPXXP 827
P PP + P PPP P P P PPP P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPP------PPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 926 NPPXPPPXXGPXTPPXSPRXPP 991
NPP PPP G PP P PP
Sbjct: 8 NPPPPPPPPG-FEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 930 PPXPPXGXGXKPPXXPPGXRP 992
PP PP G +PP PP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 441 PXPPXLXXKKXPPPPPXP 388
P PP PPPPP P
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +3
Query: 657 PNXXTPPXXA*KKPXPPPXGXKPKRXXXFXGGXPRXAPXSPQXPPPXXPXXPPP 818
P+ + P K P P P P P AP P PP P PPP
Sbjct: 152 PSPASAPPIPSKAP-PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +2
Query: 893 PXPPKXXXXXKNPPXPPPXXGPXTPPXSPRXPPRXKXKX--FPXGPPPGXKXXXPXXGGP 1066
P PP + P PP P PP SP P K P PP + P P
Sbjct: 128 PAPPTPQSELRPPTSAPPR--PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 927 TPPXPPXGXGXKPPXXPPGXRPV 995
T P PP G G P PPG RPV
Sbjct: 127 TAPPPPAGFGRGAP--PPGFRPV 147
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 851 GXGVPFSPGXXXGGXXGGXRG 789
G GVPFSP G GG G
Sbjct: 421 GDGVPFSPSMPSGSSRGGYHG 441
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -3
Query: 832 PRGLXG-GGXXGXXGGGXWGLXGAXRGXPPXNXXXLFGFXPXGGGXGFF 689
P G G GG G GG G G RG FG GG G F
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGF 182
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 866 GGGXXGXGVPFSPGXXXGGXXGGXRGGXLG 777
GGG G S G GG GG RGG G
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.146 0.481
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,307
Number of Sequences: 5004
Number of extensions: 50868
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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