Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G09
         (1347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.37 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +2

Query: 923  KNPPXPPPXXGPXTPPXSPRXPPRXKXKXFPXGPPPGXKXXXPXXGGP 1066
            + P    P   P +P  SP+ P R        GPPPG     P    P
Sbjct: 14   QQPSSGAPGPQP-SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.6 bits (56), Expect = 0.49
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 767 PXXPPGXPPXXPPGTPPX*XPGK 835
           P    G PP  PPG PP   P +
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQ 62



 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 756 PRXAPXSPQ-XPPPXXPXXPPPXXPRG 833
           P  +P +PQ   PP     PPP  P G
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.6 bits (46), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 RXPPPXPXXKGXRPPXGGXXGAPQTR 576
           R  PP P  +G  PP GG  GAP ++
Sbjct: 36  RGSPPNPS-QG--PPPGGPPGAPPSQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.146    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,042
Number of Sequences: 438
Number of extensions: 12981
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46584444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)