Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G08
         (1417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT prote...    42   0.039
UniRef50_UPI00015056F9 Cluster: DNA binding / ligand-dependent n...    35   5.9  
UniRef50_Q9Y2W2 Cluster: WW domain-binding protein 11; n=42; Eut...    35   5.9  

>UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT protein
           (Synovial sarcoma, translocated to X chromosome) (SYT
           protein); n=1; Apis mellifera|Rep: PREDICTED: similar to
           SSXT protein (Synovial sarcoma, translocated to X
           chromosome) (SYT protein) - Apis mellifera
          Length = 608

 Score = 41.9 bits (94), Expect = 0.039
 Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
 Frame = -3

Query: 929 GPXXPXXXXXFPXYPPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXTPXPRG 750
           GP  P      P Y P   +T  PP  G  P   T  P       G+   PQ   P P G
Sbjct: 509 GPAPPPGAGPQPGYGPATTQTYVPPTPGGQPQVYTPHPPQAGQHYGHPQYPQSYPPPPAG 568

Query: 749 VAEXXXPXKP--XXPPPXPG 696
                 P +P     PP PG
Sbjct: 569 QGYPQYPPRPPGGHMPPPPG 588


>UniRef50_UPI00015056F9 Cluster: DNA binding / ligand-dependent
           nuclear receptor; n=1; Arabidopsis thaliana|Rep: DNA
           binding / ligand-dependent nuclear receptor -
           Arabidopsis thaliana
          Length = 359

 Score = 34.7 bits (76), Expect = 5.9
 Identities = 20/65 (30%), Positives = 24/65 (36%)
 Frame = -3

Query: 887 PPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXTPXPRGVAEXXXPXKPXXPP 708
           PP   K+  PP     P  P   P      + +   P+  TP P        P KP  PP
Sbjct: 142 PPTPKKSPPPPKPSSPPPSPKKSPPPP---KPSPSPPKPSTPPPTPKKSPPSPPKPSSPP 198

Query: 707 PXPGK 693
           P P K
Sbjct: 199 PSPKK 203


>UniRef50_Q9Y2W2 Cluster: WW domain-binding protein 11; n=42;
           Euteleostomi|Rep: WW domain-binding protein 11 - Homo
           sapiens (Human)
          Length = 641

 Score = 34.7 bits (76), Expect = 5.9
 Identities = 28/97 (28%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
 Frame = -3

Query: 977 GAGPXXKXXXXPFXGXGPXXPXXXXXFPXYPPXLXKTXXPPLXGXXP--LXPTXXPGXXV 804
           G  P       P    GP         P  PP L     P L G  P  L P   PG   
Sbjct: 409 GPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPP 468

Query: 803 XXRGNXXXPQKXTPXPRGVA-EXXXPXKPXXPPPXPG 696
                        P PRG       P  P  PPP PG
Sbjct: 469 GPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPG 505


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,058,509
Number of Sequences: 1657284
Number of extensions: 11971956
Number of successful extensions: 28883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28193
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 149016727312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)