Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G08
(1417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 32 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.0
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 8.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 8.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 8.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 8.0
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
T16G12.5 protein.
Length = 1142
Score = 31.9 bits (69), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 158 PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 325
P ED S N + AKK + +L+ V AP T ++ + VD NE+ + L E
Sbjct: 834 PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 887 PPXLXKTXXPPLXGXXPLXPTXXPGXXVXXR-GNXXXPQKXTPXPRGVAEXXXPXKPXXP 711
PP PPL G P G R G+ P +P P P + P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 710 PPXP 699
PP P
Sbjct: 298 PPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 887 PPXLXKTXXPPLXGXXPLXPTXXPGXXVXXR-GNXXXPQKXTPXPRGVAEXXXPXKPXXP 711
PP PPL G P G R G+ P +P P P + P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 710 PPXP 699
PP P
Sbjct: 319 PPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 887 PPXLXKTXXPPLXGXXPLXPTXXPGXXVXXR-GNXXXPQKXTPXPRGVAEXXXPXKPXXP 711
PP PPL G P G R G+ P +P P P + P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 710 PPXP 699
PP P
Sbjct: 304 PPPP 307
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 29.1 bits (62), Expect = 8.0
Identities = 25/80 (31%), Positives = 26/80 (32%)
Frame = -3
Query: 929 GPXXPXXXXXFPXYPPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXTPXPRG 750
GP P P P T PP P P PG + RG P T RG
Sbjct: 214 GPKGPRGTPG-PTGPKNFYITSGPP-GPPGPPGPPGNPGG-IGPRGPPGDPGIMTQDSRG 270
Query: 749 VAEXXXPXKPXXPPPXPGKK 690
V P P P PG K
Sbjct: 271 VEGPSGPSGPPGPMGFPGPK 290
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 8.0
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Frame = -3
Query: 944 PFXGXGPXXPXXXXXFPXYPPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXT 765
P G P P PP PP+ G P P PG G P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGG---PPPPP 762
Query: 764 PXPRGVAEXXXPXKP------XXPPPXPG 696
P P G P P PPP PG
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 8.0
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Frame = -3
Query: 944 PFXGXGPXXPXXXXXFPXYPPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXT 765
P G P P PP PP+ G P P PG G P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGG---PPPPP 762
Query: 764 PXPRGVAEXXXPXKP------XXPPPXPG 696
P P G P P PPP PG
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 8.0
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Frame = -3
Query: 944 PFXGXGPXXPXXXXXFPXYPPXLXKTXXPPLXGXXPLXPTXXPGXXVXXRGNXXXPQKXT 765
P G P P PP PP+ G P P PG G P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGG---PPPPP 345
Query: 764 PXPRGVAEXXXPXKP------XXPPPXPG 696
P P G P P PPP PG
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,540
Number of Sequences: 27780
Number of extensions: 322576
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4027384386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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