Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G06
         (1384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.7  
06_03_0218 + 18219956-18220555                                         30   4.9  
04_01_0486 - 6404315-6404333,6404803-6405260                           30   4.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    29   8.6  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 591 CWRFSIGSAPLTSITKIDAQVXGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 749
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -1

Query: 868 GGXVHTXQLGAXDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRL 689
           GG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR 
Sbjct: 82  GGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKRR 137

Query: 688 VS 683
            S
Sbjct: 138 AS 139


>04_01_0486 - 6404315-6404333,6404803-6405260
          Length = 158

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 766 KGGQVSGK-RQGRNRRAHEGASRGKRLVSL*SCRVSPPXT*ASIFVMLVRGAEPMEKRQQ 590
           +GG   G+ R+GR R A  G  R +         VSPP     +  +   G     +R +
Sbjct: 53  RGGASGGRGRRGRQRAAQGGGGRQRARGGGEVAVVSPPGRSPPLRQIWQEGRRRQGRRAR 112

Query: 589 RGLFTVXGLLLAFC 548
           RGL    G L+  C
Sbjct: 113 RGLVVAGGGLVRRC 126


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 372 NESAN---ARGEAVCXLGALPLPRSLTRCAR 455
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,254,404
Number of Sequences: 37544
Number of extensions: 515466
Number of successful extensions: 1442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4350790500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)