Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G04
         (1341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    28   3.4  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   4.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   4.5  

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 390 PTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSS 554
           PT++S    TP  +  ++  K  R      +  G I  VTF CV I   WF++ S
Sbjct: 170 PTYLSWELSTPFLNIHYFLDKTNRTGSKFQMINGFILIVTFICVRIAWGWFSAYS 224


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 594 LEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTF 713
           +E L+K L KLN R+ V+R Q  D         GT+ + +
Sbjct: 734 MEQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINY 773


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 323 NKNVSS-PRNTATTKCSSSHAGQAYSYVRTSTYAG*THRALVPER 454
           +KN SS P +    K S  H  Q+Y +++ S     T R  VP R
Sbjct: 160 HKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKPVPRR 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,464,928
Number of Sequences: 5004
Number of extensions: 84282
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)