Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G04
(1341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 108 9e-24
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 63 4e-10
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 63 4e-10
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 60 3e-09
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946... 52 8e-07
10_02_0024 - 4314090-4314269,4314387-4314458,4315093-4315227,431... 31 2.1
01_01_0621 + 4645583-4646902 31 2.7
12_02_0720 - 22510996-22512949,22513752-22514533 30 3.6
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 30 3.6
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 8.3
04_03_0904 + 20717005-20718087 29 8.3
>02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 108 bits (260), Expect = 9e-24
Identities = 89/284 (31%), Positives = 123/284 (43%), Gaps = 27/284 (9%)
Frame = +3
Query: 441 WFRKGLRIHDNPALREGIIDAVTFRC--VFIIDPWFA---------SSSNVGINKWRFLL 587
WFRKGLR+HDNPAL R VF++DP + S+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFLL 77
Query: 588 QCLEDLDKSLKKLNSRLFVVR----GQPADALPKLFREWGTTALTFEEDPEPYGRVRDHN 755
+ L DLD L++L SRL ++R G A + ++W L FE D EPY RD
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 756 IISKCREVGITVTSRVSHTLYKLDKIIE---------RNGGKAPLTYHQFQALIASMXXX 908
++ GI V S VSHTL+ +IIE +NGG+ P+TY F A+
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEPPEP 197
Query: 909 XXAEVTITPQMLNGATTXITDNHDDRXGVPTLKELGXXTEGLKP-PIWIGGEREAXXXXX 1085
E + P + G T + VP ++ELG + ++ GGE EA
Sbjct: 198 IMEEYSELPPV--GDT-----GEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMR 250
Query: 1086 XX*REKPGGXSXGXPKMTPQXW--XGTXXXXPXXKXGXXXTXXF 1211
+K PK P + T P K G + F
Sbjct: 251 ESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYF 294
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 63.3 bits (147), Expect = 4e-10
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Frame = +3
Query: 423 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVG-INKWRFLLQCLE 599
G TV WFR+ LR+ DNPAL ++ P G +++W +L Q L+
Sbjct: 10 GGRTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRW-WLSQSLK 68
Query: 600 DLDKSLKKLNSRLFVVRGQPADA---LPKLFREWGTTALTFEEDPEPYGRVRDHNIISKC 770
LD SL++L + V R + ADA L +L R+ G T L F +P VRDH +
Sbjct: 69 HLDASLRRLGAGKLVTR-RSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMM 127
Query: 771 REVGITVTSRVSHTLYKLDKIIERNG 848
GI V S + LY+ ++++ G
Sbjct: 128 AAEGIIVQSFNADLLYEPWEVVDDEG 153
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 63.3 bits (147), Expect = 4e-10
Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Frame = +3
Query: 384 ARPTHMS-APRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNV 560
A P+ MS A G TV WFR+ LR+ DNPAL A V++ P
Sbjct: 3 ASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYP 62
Query: 561 G-INKWRFLLQCLEDLDKSLKKLN-SRLFVVRGQPA-DALPKLFREWGTTALTFEE---- 719
G +++W +L Q L+ LD SL++L SRL R A AL +L R G T L F
Sbjct: 63 GRVSRW-WLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYGS 121
Query: 720 -DPE----PYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNG 848
DPE P VRDH + + GI V S + LY+ ++++ +G
Sbjct: 122 IDPEFQIDPLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDG 169
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 60.5 bits (140), Expect = 3e-09
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Frame = +3
Query: 426 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVG-INKWRFLLQCLED 602
+ TV WFR+ LRI DNPAL D VFI P G ++W +L Q L
Sbjct: 5 ERTVVWFRRDLRIDDNPALASAARDGAVLP-VFIWCPADEGQFYPGRCSRW-WLKQSLPH 62
Query: 603 LDKSLKKLNSRLFVVRGQPA-DALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREV 779
L +SL+ L L ++R + +AL + G T L + +P VRD I + +
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 780 GITVTSRVSHTLYKLDKIIERNG 848
GI++ S LY+ +I + +G
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSG 145
>06_03_1012 -
26893828-26894052,26894137-26894355,26894513-26894652,
26894790-26895198
Length = 330
Score = 52.4 bits (120), Expect = 8e-07
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Frame = +3
Query: 387 RPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSN--- 557
R T S R G + WFR LR+ DN A+ + V+ +DP ++ S
Sbjct: 71 RYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYF 130
Query: 558 ----VGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKL 680
G + +FL++CLEDL ++L K L + G+P D LP +
Sbjct: 131 GFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSI 175
>10_02_0024 -
4314090-4314269,4314387-4314458,4315093-4315227,
4315290-4315383,4315797-4315855,4315944-4315980,
4316105-4316292,4316426-4316666,4316668-4316702,
4316761-4316949,4317069-4317217,4317340-4317685
Length = 574
Score = 31.1 bits (67), Expect = 2.1
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Frame = +3
Query: 342 PETLPPPS--AQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGI-IDAVTF 512
P T P P+ + AH P+R + PG V+W + R+ DN AL + A +
Sbjct: 9 PRTAPGPANPSPAH-PSRVRVIHPGGGKPGGPVVYWMLRDQRLADNWALLHAAGLAAASA 67
Query: 513 RCVFIIDPWFASSSNVGINKWR--FLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFR 686
+ + F + + + FLL+ L L + F+ G PA+ +P L R
Sbjct: 68 SPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE-IPALVR 126
Query: 687 EWGTTALTFEEDP 725
G + L + P
Sbjct: 127 RLGASTLVADFSP 139
>01_01_0621 + 4645583-4646902
Length = 439
Score = 30.7 bits (66), Expect = 2.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 537 WFASSSNVGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWG 695
W + + W + ++L + LN ++ VRG DA +L R WG
Sbjct: 306 WVVGGGSFPLMDWMLVPYTHQNLTWAQHMLNEKVAAVRGVARDAFERLKRRWG 358
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 30.3 bits (65), Expect = 3.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 594 LEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPE 728
+E+L+K L + + L V PAD L KL + W + D E
Sbjct: 26 IEELEKELTSMTAALHKVAETPADKLDKLAKIWASDVRELSYDIE 70
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 573 WRFLLQCLEDLDKSLKKLNSRLFVVRG 653
+ FL+ C DLD+SL+K R VRG
Sbjct: 222 FEFLIMCFRDLDESLQKALHRYLEVRG 248
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.1 bits (62), Expect = 8.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 594 LEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPE 728
+E+L+K LK +N+ L V P D L + + W + D E
Sbjct: 33 IEELEKELKGMNAALHKVAETPVDQLDQQVKIWASEVRELSYDIE 77
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 324 TKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHT 434
T P P P+ AHTP PT+ P TP K T
Sbjct: 88 TPKPTPPPYTPKPTPPAHTPTPPTYTPTP--TPPKPT 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,706,334
Number of Sequences: 37544
Number of extensions: 607871
Number of successful extensions: 2027
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4213554024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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