Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G04
         (1341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    365   e-103
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.49 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.49 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.49 

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  365 bits (897), Expect = e-103
 Identities = 163/241 (67%), Positives = 190/241 (78%)
 Frame = +3

Query: 423  GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLED 602
            GKHTVHWFRKGLR+HDNP+LREG+  A TFRCVF++DPWFA S+N+GINKWRFLLQCLED
Sbjct: 20   GKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79

Query: 603  LDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREVG 782
            LD SL+KLNSRLFV+RGQPADALPKLF+EWGTT LTFEEDPEP+GRVRDHNI + C+E+G
Sbjct: 80   LDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELG 139

Query: 783  ITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMXXXXXAEVTITPQMLNGATTX 962
            I+V  +VSHTLYKLD+IIERNG K PLTYHQFQ ++ASM        T+T   +  A T 
Sbjct: 140  ISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTP 199

Query: 963  ITDNHDDRXGVPTLKELGXXTEGLKPPIWIGGEREAXXXXXXX*REKPGGXSXGXPKMTP 1142
            + ++HDD  GVPTL+ELG  TEGL PP+W+GGE EA          K    S G PKMTP
Sbjct: 200  LKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTP 259

Query: 1143 Q 1145
            Q
Sbjct: 260  Q 260


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 495 IDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 611
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 495 IDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 611
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 495 IDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDK 611
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,753
Number of Sequences: 438
Number of extensions: 6599
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46344318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)