Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G03
(1261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 31 1.9
12_02_0391 - 18533427-18533620,18534120-18534405,18534967-185350... 31 2.5
05_06_0211 + 26401495-26402224,26402932-26403014,26403295-264033... 31 2.5
04_04_0220 - 23708174-23708316,23708569-23708851 31 2.5
08_01_0105 + 756998-757225,757311-758597 30 3.3
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 30 3.3
07_03_1228 - 25009736-25010965 29 5.8
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 5.8
02_05_0772 - 31643142-31643329,31643650-31643683,31644037-316442... 29 5.8
02_01_0181 + 1237167-1237820,1238053-1238142,1238689-1238841,123... 29 5.8
04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941 29 7.7
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 29 7.7
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/102 (22%), Positives = 44/102 (43%)
Frame = +1
Query: 202 GNETARRQREPERHVKPRHYDEE*TASFSKESQGQSKNSQ*KESGQSS*RCDCEEGGVRR 381
G+ R++++ +RH K H D + + S+ +S +S ++ EE R+
Sbjct: 1138 GDRKHRKRKDRKRHRKHGHSDSDEAKRHKRRSKRRSSDSS-DDTDSDEYDSGSEEENRRK 1196
Query: 382 YNERL*QIVRAPGQG*SHASEESHC*DQNASSSKEHQITNKH 507
+ R + S AS+ S ++ SS K+H + H
Sbjct: 1197 KRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSRSH 1238
>12_02_0391 -
18533427-18533620,18534120-18534405,18534967-18535028,
18535526-18535613
Length = 209
Score = 30.7 bits (66), Expect = 2.5
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 536 QLQRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFERKDKLKE-QNLSNGSVK-SARS 709
Q R + ++ V +HF K PP +V TRA G+ K E + + Q + N +K + R
Sbjct: 3 QFPRASPHSHGMVSRHFRKGPPPKV-TRAATGVEKRIEFEGNVGSLQVMHNKELKANTRK 61
Query: 710 DVSG---EPSLYMTA 745
+ G SLY TA
Sbjct: 62 KLQGVELSLSLYDTA 76
>05_06_0211 +
26401495-26402224,26402932-26403014,26403295-26403369,
26403442-26403513,26403684-26403764,26403946-26404043,
26404694-26404819,26404931-26404979,26405352-26405547,
26406475-26406491,26406786-26406839,26406845-26407036
Length = 590
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 632 ILKNFERKDKLKEQNLSNGSVKSARSDVSGEPSLYMTALENI-SPSEVTKEEYK-QISEK 805
+LK E + ++ + G + + D+ EP L+++ E + S +E + Y+ QISEK
Sbjct: 399 VLKVGEEVKAIVIKSTAPGRIALSTKDLESEPGLFLSNKEKVFSEAEEMAQRYRDQISEK 458
Query: 806 LNKVNLDDT 832
LD +
Sbjct: 459 HQPAELDSS 467
>04_04_0220 - 23708174-23708316,23708569-23708851
Length = 141
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 470 LPAVKSIKSQTSTLNGKTSKTKQLQRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFE 649
LP + + G +S + Q++ ++ + ++K+F K PPK + R G +F
Sbjct: 31 LPPISRRSFPKGFIFGTSSSSYQVRHPTSSFLQEIEKNFIKLPPKVNSARTTVGTDCSFR 90
Query: 650 RKDK-LKEQNLS 682
R +K LK L+
Sbjct: 91 RGNKNLKPDKLT 102
>08_01_0105 + 756998-757225,757311-758597
Length = 504
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 683 YSDS-AL*VCLSFQNSSGCHSELLWPLAWV 597
YSDS A VC + + SG H ELLW +W+
Sbjct: 225 YSDSLASSVCPFYCSYSGYHDELLWGASWL 254
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 30.3 bits (65), Expect = 3.3
Identities = 29/140 (20%), Positives = 59/140 (42%)
Frame = +2
Query: 473 PAVKSIKSQTSTLNGKTSKTKQLQRVANNAIDAVQKHFTKDPPKQVATRAQNGILKNFER 652
P +KS++ + + K K+++ ++ + K +KD K +A ++
Sbjct: 365 PGLKSLEKKAA--GKKVLGLKKVEETTDST-GKLSKQSSKDDSKSSTRKASGAGSSKKQQ 421
Query: 653 KDKLKEQNLSNGSVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDT 832
K LK+++ ++ +A+ ++ E +SP V+K K + N
Sbjct: 422 KISLKQKDETDSKEDTAKD---------LSLKEMVSPKSVSKGSAKTKGSQGQDNNGSKR 472
Query: 833 SRSLDEETETPHKTPSGVLD 892
RS ++E ETP + LD
Sbjct: 473 KRSQEDEQETPRSRKNKGLD 492
>07_03_1228 - 25009736-25010965
Length = 409
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 677 LSNGSVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDTSRSLDEET 856
L+ S RS GE +Y T +EN + V +E ++ E+ + ++ +EE
Sbjct: 257 LNKESTTEERSTKIGESYIYETKVENTNEEMVDDDEGEEEPEEGGEEEEEEEEEEEEEEE 316
Query: 857 ETPHK 871
E P +
Sbjct: 317 EEPEE 321
>07_03_1147 + 24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 608 VATRAQNGILKNFERKDKLKE-QNLSNGSVKSARSDVSGEPSLYMTALENISP 763
VA ++ + ERKD K+ + L +V + + D P+L+ T ENI P
Sbjct: 1067 VACHSEVTCAQQKERKDLTKKAKELLKNTVNNQQKDEVSSPALFQTFFENIFP 1119
>02_05_0772 -
31643142-31643329,31643650-31643683,31644037-31644221,
31644483-31645146
Length = 356
Score = 29.5 bits (63), Expect = 5.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 365 RAAFGDITNAYNKSCAPQDKDK-AMPVKKVTVETKMLPAVKSIKSQTSTLNGKTSKTKQL 541
R FGD+TN K AP + +K A +K V VE + P K G T T L
Sbjct: 10 RRPFGDLTNVLGKRPAPSNLEKSAGGIKIVRVEKAVEPR-KEFDETAKASGGATRNTLPL 68
>02_01_0181 +
1237167-1237820,1238053-1238142,1238689-1238841,
1238934-1239045,1239460-1239623,1239709-1240047
Length = 503
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 683 YSDSAL*VCLSFQNSSGCHSELLWPLAWVGL 591
YSDS V F S H ELLW +W+ L
Sbjct: 230 YSDSLSSVVCPFYCSHSYHDELLWAASWLHL 260
>04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941
Length = 243
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 188 APTRLATKPLGVNENLNGMLSHGITTRSKQLAS--LKSHKDSLKIPNKRKADSPLKDV 355
A L K + +E L+G++SH I K L S +K+ + L P + +A S K+V
Sbjct: 180 AVATLLYKAVKASEELDGIISHLIKKFEKLLESHDVKTQSEKLPEPREAEAKSQAKEV 237
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 29.1 bits (62), Expect = 7.7
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 641 NFERKDKLKEQNLSNGSVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVN 820
+ E + KE+ +NG + + D GEPS M + + + + E+ +QI E N ++
Sbjct: 706 HIEESNTTKEEAPNNGGKVATQCDCQGEPS--MDVMGDAALLGHSTEQKQQIEES-NAIS 762
Query: 821 LDDTSRSLDEETETP 865
+D +S + E + P
Sbjct: 763 MD---KSCEREKDVP 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,576,792
Number of Sequences: 37544
Number of extensions: 564924
Number of successful extensions: 1381
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -