Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G03
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    27   0.46 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   7.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   9.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   9.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   9.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 677 LSNGSVKSARSDVSGEPSLYMTALENISPSEVT 775
           L  G + S    V G PS+Y+T  +NI P+ ++
Sbjct: 27  LKKGPLDSNVEVVVGVPSIYLTYAKNILPNNIS 59


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 ASSSKEHQITNKHTKWQNF 525
           ++SS EH+  ++HT   NF
Sbjct: 276 SASSNEHEAESEHTSTPNF 294


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 689 SVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDT 832
           SV+  R  ++ E  + +      S     +EE K +  K+NK+   DT
Sbjct: 136 SVEVKRDIINPEDVILIRRTGEGSKPIFEREEIKNVLTKINKIEEHDT 183


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 482 KSIKSQTSTLNGKTSKTKQLQRVANNAI 565
           K I ++ S +    + T    R+ANN I
Sbjct: 558 KGINAEPSNIEESNNMTDSFTRIANNTI 585


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 716 SGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDTSRSLDEETETPHKTPSGVLDF 895
           +G+P+LY   L  +  S++T    + IS +   +N+  T   +     T  K  SGV   
Sbjct: 11  TGQPNLYKQDLSKLDVSKLTALSREVISRQAT-INI-GTIGHVAHGKSTIVKAISGVQTV 68

Query: 896 DFEN 907
            F+N
Sbjct: 69  RFKN 72


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 689 SVKSARSDVSGEPSLYMTALENISPSEVTKEEYKQISEKLNKVNLDDT 832
           +V+  R  ++ E  + +      S     +EE K +  K+NK+   DT
Sbjct: 147 TVEVKRDTINPEDVILIRRTGEGSKPIFEREEIKNVLTKINKIEEHDT 194


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 776 KEEYKQISEKLNKVNLDDT 832
           +EE K +  K+NK+   DT
Sbjct: 176 REEIKNVLTKINKIEEQDT 194


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 752 NISPSEVTKEEYKQISEKLNKVNLDDTSRSLDEETETPHKTPSGVLDFDFE 904
           NIS      E++KQ+  + NK++L    RS  +E    H+  + ++  + E
Sbjct: 4   NISNYSYHDEKFKQLRNEDNKIDL----RSRTKEERLQHRREAWLIQQERE 50


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 476 AVKSIKSQTSTLNGKTSKTKQLQRVANNAIDAVQKHFTKDPPKQVATR--AQNGILKNFE 649
           A K IK + +    K   + +   V    ID ++K      P+        +  +L+NF+
Sbjct: 541 ATKQIKDEAN----KKGVSLRFYNVVYKLIDNIKKEIYDILPEVDVEEILGEAKVLQNFD 596

Query: 650 RKDKLKEQNLS 682
            KDK K+ N++
Sbjct: 597 IKDKNKKVNVA 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,074
Number of Sequences: 438
Number of extensions: 6588
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)