Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G02
         (1233 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XMD0 Cluster: Putative uncharacterized protein; n=3; ...    37   0.93 
UniRef50_Q4FPE2 Cluster: Possible transmembrane protein; n=2; Ca...    36   2.1  
UniRef50_Q6BMI2 Cluster: Histone transcription regulator 3 homol...    34   8.7  

>UniRef50_Q4XMD0 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 787

 Score = 37.1 bits (82), Expect = 0.93
 Identities = 26/77 (33%), Positives = 42/77 (54%)
 Frame = -3

Query: 448 NINQRH*YFDHFQLIYIFCHYLKFNKHI*INCLIWCFIRVSRSLK*LYSRF*T*NSAGLK 269
           NIN +H + ++FQLIYI   Y+  NK + I  +I   I    +LK +  +    N+  LK
Sbjct: 44  NINLKHVHNENFQLIYIILKYISENK-VNIEVIILDRILCHLNLKNILKKN---NNIKLK 99

Query: 268 CSNNIVKII*FYKRCNV 218
             NNI+ +I  Y+  ++
Sbjct: 100 YINNILSVINKYEHVHI 116


>UniRef50_Q4FPE2 Cluster: Possible transmembrane protein; n=2;
           Candidatus Pelagibacter ubique|Rep: Possible
           transmembrane protein - Pelagibacter ubique
          Length = 312

 Score = 35.9 bits (79), Expect = 2.1
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +2

Query: 695 LVPK*LFVIEIMEPFKLLIAENFSFTVKIYLHRLPSNYLKSRIFHSIKFTELFFFSSVF* 874
           + P     +E +  FKLL+ +N SF   ++L+ + +NY+ S IF     T ++FF   F 
Sbjct: 138 IAPLMFHFVETINIFKLLLIQNESFY--LFLNFIENNYIISFIFLISLLTNIYFFLKDFK 195

Query: 875 IFNTXLYM-YI*YXYXXHLKCPLTDXLIGICVLXNLVFHLS 994
           + N  ++  +       +   PL    +  C L +    LS
Sbjct: 196 LVNLLIFFDFTSILILNYFFTPLVAFTLYFCFLHSFRHSLS 236


>UniRef50_Q6BMI2 Cluster: Histone transcription regulator 3 homolog;
           n=1; Debaryomyces hansenii|Rep: Histone transcription
           regulator 3 homolog - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 1776

 Score = 33.9 bits (74), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 78  PSFKKYFNWPFFYFYYTVQNKKSYFRHCVQLNQSYIAFYLKHN 206
           P   K  +W   + YY   N+ + F+H  + N S+I +YL  N
Sbjct: 755 PVDMKLSSWNILFLYYDENNQFAKFQHGFEQNVSFILYYLNSN 797


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,218,096
Number of Sequences: 1657284
Number of extensions: 15866184
Number of successful extensions: 32152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32111
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 124315585013
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)