Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_G02
         (1233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical pr...    30   2.9  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    30   2.9  

>Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical
           protein F28D9.2a protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 33  PDXPRQLYLNRTPXIPSFKKYFNWPFFYFYYTVQNKKSYFRHCVQLNQSYIAFYLK 200
           P  P   Y+     I  F    N+  FYF +    K+S FR+C+   Q +IAF ++
Sbjct: 9   PYGPPDYYMKTLQLIGLFSLPINFLCFYFVWFYTPKESKFRYCLAYFQ-FIAFLVE 63


>Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical
           protein F28D9.2b protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 33  PDXPRQLYLNRTPXIPSFKKYFNWPFFYFYYTVQNKKSYFRHCVQLNQSYIAFYLKHNFA 212
           P  P   Y+     I  F    N+  FYF +    K+S FR+C+   Q  +  Y K +F 
Sbjct: 9   PYGPPDYYMKTLQLIGLFSLPINFLCFYFVWFYTPKESKFRYCLAYFQ--VFGYFKFSFE 66

Query: 213 CTTL 224
             +L
Sbjct: 67  LPSL 70


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
            protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 87   KKYFNWPFFYFYYTVQNKKSYFRHCVQLNQSYIAFYLKH----NFAC 215
            K +F  P F F+Y++QN      H  QL   Y  F  KH     FAC
Sbjct: 914  KNFFQCPMFDFFYSLQNISFCGAHPKQL--KYFGFITKHPLLPRFAC 958


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,685,836
Number of Sequences: 27780
Number of extensions: 415492
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)