Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_G01
(1222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.080
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.75
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 1.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 28 3.0
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 3.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 4.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 5.3
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 7.0
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 33.1 bits (72), Expect = 0.080
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 793 NKQVEMLQDQKKSQRDSLIAELERKRALRVYDADDIKAQATKAAKDVQESEEKLKSLRE 969
NKQ ++ K + ++ + ELE+KR+ +++ + I Q A D++ ++LK+ E
Sbjct: 15 NKQTSLVLQNLKEETENQLKELEKKRS-QLHKEEQINLQLVYAINDLRSKTKELKAENE 72
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.75
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Frame = +1
Query: 565 APFEEELFAKTDEVKALESRKNKLLEMLNQQ-------AEEKGKRAERLENLDQDIKMFX 723
A F ++L K+D ++ L + KN+L+ L Q EE+ A RL ++ + +
Sbjct: 1133 ANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSD 1192
Query: 724 XXXXXXXXXXXXXXXXXDAIIKENKQVEMLQDQKKSQRDSLIAELER-KRALRVYDADDI 900
D + K+ + + RD L+ L+ + + Y A +
Sbjct: 1193 NVISVIRSDLVRVNDELDTLKKDKDSLSTQYSEVCQDRDDLLDSLKGCEESFNKY-AVSL 1251
Query: 901 KAQATKAAKDVQESE 945
+ TK+ DV SE
Sbjct: 1252 RELCTKSEIDVPVSE 1266
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +1
Query: 796 KQVEMLQDQKKSQRDSLIAELERKRALRVYDADDIKAQATKAAKDVQESEEKLKSLRETL 975
KQV+ L D + Q+D I EL+ + YD + +KA A D E ++ L S RE
Sbjct: 151 KQVKTLHDLNE-QKDKKIKELKERINDLTYDYETLKANA-----DDSEGKQTLVSKREAA 204
Query: 976 MQ 981
++
Sbjct: 205 LE 206
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 1.7
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +1
Query: 574 EEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLENLDQDIKMFXXXXXXXXXXX 753
+EE K +E + ++ K E+ Q+ EEK K+ ER + L + +
Sbjct: 634 QEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK--QQQEADREKMAREQ 691
Query: 754 XXXXXXXDAIIKENKQVEML--QDQKKSQRDSLIAELERK-RALR 879
I++E K+ E L +++++ +R+ L E E K R LR
Sbjct: 692 RLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLR 736
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 641 SNSLFLRLSKAFTSSV-FANNSSSN-GAISLNLPSLKSIKLKSNR 513
S+ L RLSK SS+ +NNSSSN G L P+L ++ SN+
Sbjct: 57 SSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNK 101
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 781 IIKENKQVEMLQDQKKSQRDSLIAELERKRALRVYDADDIKAQATKAAKDVQESEEKLKS 960
+++ +QVE L Q QR + E E+K+ + D ++ ++ AK+ + E ++
Sbjct: 139 VVRLTRQVETLSTQYSIQRSQWVREDEKKKK-EIQDLKELYEKSEHGAKNWERERETFQN 197
>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 859 ERKRALRVYDADDIKAQATKAAKDVQESEEK-LKSLRETLMQXXIFEELXTXSPIW 1023
E + V + +D KA + D E +EK K ++ET + EEL PIW
Sbjct: 220 EEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTET---EELNKTKPIW 272
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 793 NKQVEMLQDQKKSQRDSLIAELERKRALRVYDADDIKAQATKAAKDVQESEEKLKSLRET 972
N Q ++QD K++ + + E++++ L VY+ +K + ES+ LK+LRE
Sbjct: 988 NYQNNLVQD--KNELEERLKEIQKE--LEVYNNHFMKQAELMTSNVTDESQLMLKTLREA 1043
Query: 973 L 975
L
Sbjct: 1044 L 1044
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 784 IKENKQVEMLQDQKKSQRDSLIAELERKRALRVYDADDIK 903
+++ E+ + Q+ S+RD + L R A +Y+ DD+K
Sbjct: 473 VRKISDEEVEKIQQVSKRDDIYDILSRSLAPSIYEMDDVK 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,834,103
Number of Sequences: 5004
Number of extensions: 67648
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -