Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F23
(1201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 151 2e-37
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 43 7e-05
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 30 0.73
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 3.9
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 27 3.9
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 3.9
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 3.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 3.9
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.9
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 3.9
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 6.8
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 27 6.8
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 9.0
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 151 bits (365), Expect = 2e-37
Identities = 69/142 (48%), Positives = 96/142 (67%)
Frame = +1
Query: 205 DPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEWKERGTGDVKLL 384
D E + HFEPIV L V+ +T+EE+E K+RA+L+R+D EWKERGTGD +LL
Sbjct: 65 DAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLL 124
Query: 385 RHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFADYADETCKQELL 564
+HK R+VMRRDKTLKVCANH + P++++ + GSDR++ W+V AD ++ E
Sbjct: 125 KHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETF 184
Query: 565 AIKFGNPQNAELWKAKFAEAQE 630
AI+F N +NA L+K F + QE
Sbjct: 185 AIRFANSENANLFKENFEKYQE 206
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 43.2 bits (97), Expect = 7e-05
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 265 DIQTHEEDEEELAKIRARLYRYDTGDHEWKERGTG--DVKLLRHKLNNTVRVVMRRDKTL 438
+I T EE+EE + +RARLY WKERG G V + + + + + R++MR D
Sbjct: 267 EIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVH 326
Query: 439 KVCAN 453
+V N
Sbjct: 327 RVIMN 331
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 29.9 bits (64), Expect = 0.73
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 451 NHFITPDIRMNVHCGS--DRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEA 624
+HF PD++MN H S DR + + + + + P ++ ++F A
Sbjct: 546 SHFEVPDLKMNHHDSSFFDRHIDQTAMPGQNQHGTVKNMETMHHFYP---DVHNSEFPAA 602
Query: 625 QEIVRTKCSLYCQDQSSDDE 684
V+++ Y Q Q++DDE
Sbjct: 603 PNPVKSQVPYYYQSQAADDE 622
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 431 LSLLITTRTVLFSL*RRSLTSPVPLSFHS 345
LSL RT+LFSL L P P FHS
Sbjct: 121 LSLFAFCRTILFSLLTSFLLVPPPQFFHS 149
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 664 DQSSDDESSITRSEDTDTPEPKSTEKS 744
D SSD ES+ + SE TD E K+ EKS
Sbjct: 190 DSSSDSESNTSFSE-TDVEEEKAEEKS 215
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 237 EVWIMFRSFWISTFALTVSTHAFFTWRRHSVNLQVCS 127
EV+ +R F ISTF L + FT R ++ VC+
Sbjct: 88 EVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCA 124
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Frame = -2
Query: 297 LLFIFFVSLNIYQGQR------YDGFEVWIMFRS-FWISTFALTVSTHAF----FTW 160
LLF F +IY G R + VWI FWIST A+ +S F F+W
Sbjct: 1476 LLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSW 1532
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 529 DYADETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSSDDESSITRSED 708
D DE+ K+ G+ +N E W+ A A++ + + + +S+ ++ T +
Sbjct: 1159 DLDDESLKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQ---TEFSE 1215
Query: 709 TDTPEPKSTEKSS 747
T TP+ T+ S+
Sbjct: 1216 TSTPQAMLTKDST 1228
Score = 26.2 bits (55), Expect = 9.0
Identities = 21/85 (24%), Positives = 45/85 (52%)
Frame = +1
Query: 496 SDRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSS 675
S+ A +W+ +D+ + L +K+ NP + + + EA+E + L +D+ +
Sbjct: 241 SESAVDWNYLLKTSDDLLSVDELKLKYSNPDLIKNIERE-EEAEETSDDE-PLSSEDEEN 298
Query: 676 DDESSITRSEDTDTPEPKSTEKSSV 750
+DE IT E+++ + K ++K+ V
Sbjct: 299 EDE-DIT--EESNLRKRKVSDKTRV 320
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 821 LKTKNQIRLTNFNNFNYVCNDIIRGQ 898
LK KN + ++ NNF + D++R Q
Sbjct: 271 LKAKNMLNASSTNNFTIIQRDVVRQQ 296
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 643 KCSLYCQDQSSDDESSITRSEDT-DTPEPKSTEKSS 747
K S + ++SS+DESS++ ED + EP+ + +S+
Sbjct: 3 KSSEFVNEESSEDESSVSSIEDQHSSKEPEQSVESN 38
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 342 IAGVVAIKTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVSTHAF 169
+A V KT L LFI F + + ++GF ++F F+++ L VS F
Sbjct: 22 VANDVFKKTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGF 79
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 658 NKDYISSSQFLELLQTLPSIVQHSEGFQT**PAILVYMSHQHNQQIQTS 512
NKDY+ + ELL PS ++ E P + Y+S ++++ S
Sbjct: 49 NKDYVGQQEEEELLYDQPSYIEEEED-----PDLEAYLSDLEREELEHS 92
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 268 IQTHEEDEEELAKIRARLYRYD 333
++ HE+ EEL KI A LY+ D
Sbjct: 75 LENHEQSFEELEKITASLYQPD 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,793,426
Number of Sequences: 5004
Number of extensions: 72296
Number of successful extensions: 269
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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