Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F23
(1201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 118 1e-26
03_02_0648 - 10157911-10158104,10159621-10159789,10159897-101599... 100 5e-21
05_03_0628 - 16367841-16369259 38 0.012
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 33 0.59
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 30 4.2
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 30 4.2
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 29 9.6
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 118 bits (283), Expect = 1e-26
Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 6/149 (4%)
Frame = +1
Query: 310 RARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVH 489
+A+LYR+D ++WKERGTG VKLL+HK N VR+VMR+ KTLK+CANH + +M H
Sbjct: 372 KAKLYRFDKEGNQWKERGTGTVKLLKHKENGKVRLVMRQAKTLKICANHLVASTTKMQEH 431
Query: 490 CGSDRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEAQE-IVRTKCSLYCQD 666
GSD++ W AD+AD K+E+ AI+FG+ +N + +K E E + +T+ +D
Sbjct: 432 AGSDKSCVWHA-ADFADGELKEEMFAIRFGSVENCKKFKDLVEEISESLAKTEGKETEED 490
Query: 667 QSSD---DESSIT--RSEDTDTPEPKSTE 738
S+ ++ S+T +SE+ T E +STE
Sbjct: 491 SSAAGLLEKLSVTEKKSEEVATKE-ESTE 518
>03_02_0648 -
10157911-10158104,10159621-10159789,10159897-10159993,
10160089-10160246
Length = 205
Score = 99.5 bits (237), Expect = 5e-21
Identities = 59/167 (35%), Positives = 92/167 (55%)
Frame = +1
Query: 241 PIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVM 420
PIV L V + T EEDEE L ++++LYR+D ++WKERGTG VKLL+HK + V
Sbjct: 31 PIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETGKMDGV- 89
Query: 421 RRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFADYADETCKQELLAIKFGNPQNAEL 600
R D + VCA + +M H GSD++ W D+AD K+E+ AI+FG+ +N +
Sbjct: 90 RLDWVMFVCA---VATTTKMQEHAGSDKSCVWHAL-DFADGELKEEMFAIRFGSVENCKK 145
Query: 601 WKAKFAEAQEIVRTKCSLYCQDQSSDDESSITRSEDTDTPEPKSTEK 741
++ E E + K ++ S + + T+T + ++ EK
Sbjct: 146 FREMVEEIAE-QQGKNEEKENEEVSSTAGLVEKLSVTETKKEENAEK 191
>05_03_0628 - 16367841-16369259
Length = 472
Score = 38.3 bits (85), Expect = 0.012
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +1
Query: 250 SLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEWKERGTGDVKL-LRHKLNNTVRVVMRR 426
++P ++T EE+E+ + + LY Y G WKERG G++KL + R+VMR
Sbjct: 330 AMPEGPVETGEENEKAIFTADSALYEYLDGG--WKERGKGELKLNIPVSGGERSRLVMRT 387
Query: 427 DKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFADYADETCKQELLAIKFGNPQNAELWK 606
++ N + D M++ + ++ D A+KF + E +K
Sbjct: 388 KGNYRLVLNASLYED--MSLKDMDKKGVTFACMNSIGDSQSGLATFALKFRDTSIREEFK 445
Query: 607 A 609
A
Sbjct: 446 A 446
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 32.7 bits (71), Expect = 0.59
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 783 VCLIIFVRFFIY*RLFSTLWFRCVSILTSSYTAFI 679
+ ++ FF+Y LFS++WF+ +L+ +Y F+
Sbjct: 356 IAIVSSTGFFLYLSLFSSVWFKVYVLLSCAYLTFV 390
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 324 IKTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVST 178
+ TS++LC ++FI F +N+Y + DG +W R S F L + T
Sbjct: 220 VATSTFLCIIVFI-FSWVNVYYERGDDGGSIWKALRKETYS-FVLIIYT 266
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 298 LAKIRARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITP 468
L + A + Y G ER GD + +KLN TV + ++ LK+ TP
Sbjct: 276 LGCLPATIRLYGKGRSGCVERLNGDAETFNNKLNITVEALAKKHSDLKIAIFDIYTP 332
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +1
Query: 271 QTHEEDEEELAKIRARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCA 450
Q +D +++ R ++YR T D +W ++GTG V + + + + + + ++
Sbjct: 12 QAGPDDAVQISMQRVKVYRL-TDDGKWDDQGTGHVTIDYIEGSREIALTVVDEEDSDTLL 70
Query: 451 NHFITPD 471
H IT D
Sbjct: 71 LHHITSD 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,702,571
Number of Sequences: 37544
Number of extensions: 489959
Number of successful extensions: 1192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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