Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F23
         (1201 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   3.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   5.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   9.3  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 737 KSLQ*MKNRTKMMRQTPMV*Y*SLRN*KLKTKNQIRLTNFNNFNYVCND 883
           +S +  ++RT+  R        SL N  +   N     N+NN+NY  N+
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNN 110


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 538 DETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSSDDESSIT 696
           DE C+     +     +  E+ + K   + +I  TKC  +C  Q     +S T
Sbjct: 33  DENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCEGFCNSQVQPSVASTT 85


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 538 DETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSSDDESSIT 696
           DE C+     +     +  E+ + K   + +I  TKC  +C  Q     +S T
Sbjct: 33  DENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCEGFCNSQVQPSVASTT 85


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 500 SDPQCTFILISGVMK*FAHTFRVLSLLITTRTVL 399
           S  + T IL++GV+  + +TF +L+   T   +L
Sbjct: 549 SGRELTIILLAGVLVCYLNTFLLLATPTTVTCIL 582


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 500 SDPQCTFILISGVMK*FAHTFRVLSLLITTRTVL 399
           S  + T IL++GV+  + +TF +L+   T   +L
Sbjct: 639 SGRELTIILLAGVLVCYLNTFLLLATPTTVTCIL 672


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 673 SDDESSITRSEDTDTPEPKST 735
           S   SSI+ SE+ D  +PK T
Sbjct: 372 SSSSSSISSSEENDFWQPKPT 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,641
Number of Sequences: 438
Number of extensions: 5302
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)