Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F20
         (1321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.038
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    30   0.62 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 21/61 (34%), Positives = 21/61 (34%)
 Frame = +3

Query: 861  PPXXXFXXXXXKXKXPPPPPXGXGGGXXXPPPGXXXXXGGGXPPPXGGGXKXPPPXXXXG 1040
            PP             P PPP    GG   PPP      G G PPP       PPP    G
Sbjct: 735  PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPPPP-----PPPPPAVSAG 788

Query: 1041 G 1043
            G
Sbjct: 789  G 789



 Score = 30.7 bits (66), Expect = 0.47
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = -1

Query: 1006 PPPX---GGGXPPPXXXKXPGGGXXXPPPXPXGGGGG 905
            PPP    GG  PPP      G G   PPP P     G
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 29.9 bits (64), Expect = 0.82
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 1008 PXPPXGGGXPPPXXXXPPGGXGXXPPXXP 922
            P  P  GG PPP    PPG  G  PP  P
Sbjct: 753  PPAPIMGGPPPP--PPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = -2

Query: 1041 PPXXXXGGVFXPXPPXG--GGXPPPXXXXPP 955
            PP    GG   P PP G  G  PPP    PP
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
 Frame = +3

Query: 816  PPPXKKKXXXPPQKXPPXXXFXXXXXKXKXPPPPPXGXGGGXXXPPPGXXXXXGGGXPPP 995
            PPP   K   P +  PP           +  PPPP     G   PPP      G   PPP
Sbjct: 209  PPPMHHK---PGEHMPPPPMHHEPG---EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262

Query: 996  ---XGGGXKXPPP 1025
                  G   PPP
Sbjct: 263  PMHHEPGEHMPPP 275



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 909  PPPPXGXGGGXXXPPPGXXXXXGGGXPPP---XGGGXKXPPP 1025
            PPPP     G   PPP      G   PPP      G   PPP
Sbjct: 208  PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 909  PPPPXGXGGGXXXPPPGXXXXXGGGXPPP---XGGGXKXPPP 1025
            PPPP     G   PPP      G   PPP      G   PPP
Sbjct: 260  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 909  PPPPXGXGGGXXXPPPGXXXXXGGGXPPP---XGGGXKXPPP 1025
            PPPP     G   PPP      G   PPP      G   PPP
Sbjct: 286  PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 909 PPPPXGXGGGXXXPPPGXXXXXGGGXPPP 995
           PPPP     G   PPP      G   PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -1

Query: 955 GGGXXXPPPXPXGGGGGXFXXXXXXXKXXXGGFFWGGXXXFFFXGGG 815
           GGG   PPP P G GG              GGF  GG    F  G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPG 238



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 24/69 (34%), Positives = 25/69 (36%)
 Frame = -1

Query: 1021 GGXFXPPPXGGGXPPPXXXKXPGGGXXXPPPXPXGGGGGXFXXXXXXXKXXXGGFFWGGX 842
            GG F     G G PPP      G G         GG GG F       +   GG F GG 
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGGFEGGPGG-FGGGP 244

Query: 841  XXFFFXGGG 815
              F   GGG
Sbjct: 245  GGF---GGG 250


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +2

Query: 908  PPPPXGXXGGXXPXPPGGFXXXGGGXPPPXGGXGKXTPP 1024
            PPPP     G  P PP G        P      G+  PP
Sbjct: 340  PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -1

Query: 1042 PPXXXXGGGXFXPPPXGGGXPPPXXXKXPGGGXXXPPP 929
            PP      G    PP G   PPP   +        PPP
Sbjct: 341  PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 900 KXPPPPPXGXGGGXXXPPPGXXXXXGGGXPPP 995
           K PPPPP         PP G         PPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 1006 PPPXGGGXPPPXXXKXPGGGXXXPPP 929
            PPP     PPP     P G    PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 1164 PPXXLXPPPPPXXF 1123
            PP    PPPPP  F
Sbjct: 5    PPGNPPPPPPPPGF 18



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 1008 PXPPXGGGXPPPXXXXPPGGXG 943
            P PP   G  PP    PP   G
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,822
Number of Sequences: 5004
Number of extensions: 40286
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)