Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F19
         (1285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   1.8  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   4.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   5.6  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   9.8  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +1

Query: 655 SFELDASLLLSCIILIFNKLILPNFYFLISLFPN 756
           +F+LD + +L  I+L+F++ +L ++ F +S+  N
Sbjct: 216 AFDLDPNKVLDLILLLFSENLLDSWRFFLSILRN 249


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 258 GIRCQKCLEFGHWSYECK 311
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = +3

Query: 252 PQGIRCQKCLEFGHWSYEC--------KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 398
           P G  C +C + GHW   C         GK ++       R   KN++   EG  +N
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAAN 236


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 817 DVFRLKNYSMKEFEERINKI 758
           +V RLKN   KE EE++N++
Sbjct: 393 EVNRLKNLKRKELEEKLNQV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,289
Number of Sequences: 5004
Number of extensions: 71830
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)