Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F18
         (1320 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   126   4e-31
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.9  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   6.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   6.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  126 bits (304), Expect = 4e-31
 Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 13/255 (5%)
 Frame = +3

Query: 129 EAN*IRKMTSSEVSSXRKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFE 308
           E   +  + +S +++    +  D   V+   ++    I +F++ GLR  LL  +   G+ 
Sbjct: 120 EVENVEDLFTSGITTGVNFMKLDEIEVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYT 179

Query: 309 KPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL---------DTTLRETQVL 461
           KP+AIQ+ +I  I+ GRD+++ AQ+G+GKTA F + I+  L         +    +  V+
Sbjct: 180 KPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVV 239

Query: 462 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 641
           I+SPTRELA QI            V+     GGT+      ++  G H++  TPGR+ D 
Sbjct: 240 IMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDF 299

Query: 642 IRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PAT---QVVLISATLPHEIL 809
           + R  +   S+K  VLDEAD ML+ GF   + ++  +   PAT   Q ++ SAT P E+ 
Sbjct: 300 VNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQ 359

Query: 810 EMTSKFMTDPIRILV 854
           ++  KF+ + I I V
Sbjct: 360 QLAGKFLLNYIFIAV 374


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 318 LKVFRNHMCIFLAITHLEVPWSQKWV*LR 232
           +K F+   C F+AIT LE  W+   V +R
Sbjct: 199 IKTFKCKQCDFVAITKLE-QWNHSKVHIR 226


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 542 SCLYWRYQSWRRY 580
           +C +W YQS+  Y
Sbjct: 122 NCFFWSYQSYMSY 134


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 542 SCLYWRYQSWRRY 580
           +C +W YQS+  Y
Sbjct: 122 NCFFWSYQSYMSY 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,816
Number of Sequences: 336
Number of extensions: 5262
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 39049180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)