Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F17
         (1375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       36   0.075
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.40 

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 35.9 bits (79), Expect = 0.075
 Identities = 33/109 (30%), Positives = 33/109 (30%), Gaps = 4/109 (3%)
 Frame = -1

Query: 1303 PXGXGGXXXPPXGXXX--PXXXPXXGXXXX--PPXPXGXXGXXXXXXXXGXGGXXGXXXG 1136
            P G GG   P  G     P   P  G      PP P G  G        G GG  G    
Sbjct: 100  PLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALAR 159

Query: 1135 XPXGXXXPXXGXPPXXXXXXXXXXXXGGXGPXXKPXXPGPFXGXGPXXA 989
             P G      G PP            GG GP   P   G   G GP  A
Sbjct: 160  PPGGGRGGALGRPP--------GGGGGGGGPGRAPGGGG--GGGGPGRA 198



 Score = 34.7 bits (76), Expect = 0.17
 Identities = 32/118 (27%), Positives = 32/118 (27%), Gaps = 1/118 (0%)
 Frame = -3

Query: 1352 PGXXFXXGXXXXXXXXPXGXXGXXXPPXGGXPPXXXTXXGGXXXXPPPXGXXXXXXXXXX 1173
            PG     G        P G  G   PP    PP      GG    PP  G          
Sbjct: 92   PGGGGAPGPLGGGGARPPGGGGGGGPP--SLPPGAG---GGGGARPPAPGGGGGGGAPRR 146

Query: 1172 GXXXGXPGGXXGXXPGXXXX-PXGXPPPXXXGXXFXXXXXGGGAXGKTPPXRPFXGXG 1002
                G  GG     PG       G PP    G        GGG  G  P   P  G G
Sbjct: 147  VLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGG 204


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 33/130 (25%), Positives = 33/130 (25%), Gaps = 2/130 (1%)
 Frame = -3

Query: 1268 GGXPPXXXTXXGGXXXXPPPXGXXXXXXXXXXGXXXGXPGGXXGXXPGXXXXPXGXPPPX 1089
            G  PP      G     PPP G          G   G  G      P       G PPP 
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIG---GLGGHQAPPAPPLPEGIGGVPPPP 1152

Query: 1088 XXGXXFXXXXXG--GGAXGKTPPXRPFXGXGPFXGPXXXXFFXXYPPXXGXXXXPPXXXX 915
              G            G  G TPP     G  P   P         PP       PP    
Sbjct: 1153 PVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPG 1212

Query: 914  XPLPPXXXPG 885
             P  P   PG
Sbjct: 1213 VPGGPPPPPG 1222



 Score = 32.7 bits (71), Expect = 0.70
 Identities = 31/109 (28%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
 Frame = +1

Query: 1003 PXPXKGRXGGVXPXAPP-PXXXXXKXXPXXXGG-GXPXGXXXXPGXXPXXPP-----GXP 1161
            P P  G  G   P APP P        P   GG G P       G     PP     G  
Sbjct: 1124 PPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVA 1183

Query: 1162 XXXPXXXXXXXXXXPXGGGXXXXPPXXVXXXGGXPPX-GGXXXPXXPXG 1305
               P          P        PP      GG PP  GG   P  P G
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/84 (27%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
 Frame = +1

Query: 928  GGXXXXPXXGGXXXKXXXXX-GPXKGPXPXKGRXGGVXPXAPPPXXXXXKXXPXXXGGGX 1104
            GG    P  GG             +G  P     GGV P  PPP        P    G  
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAP 1205

Query: 1105 -PXGXXXXPGXXPXXPPGXPXXXP 1173
             P      PG  P  P G     P
Sbjct: 1206 APPMPPGVPGGPPPPPGGRGLPAP 1229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,937,306
Number of Sequences: 37544
Number of extensions: 418589
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4341590196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)