Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F16
         (1352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.091
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.48 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.84 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.091
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -2

Query: 601 PFXGGXXPPPX----GGXXPPPPPPP 536
           P  GG  PPP      G  PPPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.64
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -2

Query: 967 PPPXXGGXFXXPPP---XGGXPPPPXXXPP 887
           P P  GG    PPP    G  PPPP   PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 580 PPPXGGXXPPPPPPP 536
           P P  G  PPPPPPP
Sbjct: 754 PAPIMGGPPPPPPPP 768



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 606 PPPXXGXXXPPXGGGXXPPPPPXPXXXXXXXXXXXXGPXKXPXP 475
           PPP  G      G G  PPPPP P             P   P P
Sbjct: 764 PPPPPGVA----GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = -2

Query: 580 PPPX---GGXXPPPPPPPXG 530
           PPP    GG  PPPPPPP G
Sbjct: 752 PPPAPIMGG--PPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 460 PPPXGGXGXFXGXPPPPPXKKXPXPGXGGGGGXXPPP 570
           PPP        G  PPPP    P    GG     P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -2

Query: 934 PPPX---GGXPPPPXXXPPXXGGEXXXPXP 854
           PPP    GG PPPP   PP   G    P P
Sbjct: 752 PPPAPIMGGPPPPPP--PPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 604 PPFXGGXXPPPXGGXXP--PPPPPPXG 530
           PP      PPP G   P  PPPPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 493  GXPP-PPPXKKXPXPGXGGGGGXXPPPXGGXXXPPXRGGXP 612
            G PP PPP +  P P    G    PPP      P    G P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 568 GGXXPPPPPPPXGXXFF 518
           GG  PPPPPPP    F+
Sbjct: 303 GGLPPPPPPPPPSNDFW 319


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 934  PPPXGGXPPPPXXXPPXXGGEXXXPXPL 851
            PPP    PPPP   P   G     P PL
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -3

Query: 606  PPPXXGXXXPPXGGGXXPPPPPXPXXXXXXXXXXXXGPXKXPXPP 472
            PP       PP      PPPPP              GP   P PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 934  PPPXGGXPPPPXXXPPXXGGEXXXPXP 854
            PPP     PPP   PP   G    P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +1

Query: 463 PPXGGXGXFXGXPPPPPXKKXPXPGXGGGGGXXPPPXGGXXXPP 594
           PP G        PPPP     P P     G    PP G    PP
Sbjct: 325 PPIGNGSSNSSLPPPP-----PPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 592 GGXXPPPXGGXXPPPPPP 539
           G    PP G   PPPPPP
Sbjct: 349 GSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 589 GXXPPPXGGXXPPPPPPP 536
           G  P P  G   PPPPPP
Sbjct: 349 GSIPLPPQGRSAPPPPPP 366


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 568 GGXXPPPPPPPXGXXFFXGGGGGG 497
           GG    PPP P G   F G GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.152    0.524 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,902
Number of Sequences: 5004
Number of extensions: 34098
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)