Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F16
         (1352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 574  PXGGXXPPPPPPP 536
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 577  PPXGGXXPPPPPP 539
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 556  PPPPPPP 536
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 556  PPPPPPP 536
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.0 bits (47), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 556  PPPPPPPXGXXF 521
            PPPPPP  G  +
Sbjct: 1357 PPPPPPSSGQAY 1368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.152    0.524 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,052
Number of Sequences: 438
Number of extensions: 8031
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46824570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)