Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F14
         (1394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.51 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 661  PPPPPPPP 684
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 1314 PPPPPPXXG 1340
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 772  RXXGGXXXPPPXGGXXPPPPPP 707
            R  G     P  G   PPPPPP
Sbjct: 1843 RSVGSARNIPVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 4.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 662  PPPPPPPP 685
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
 Frame = +1

Query: 1279 GXPPPPXXXXXPPPPPPXXXGXPP-----PPPGGXXXXPP 1383
            G P P       P  P    G PP     PPPGG    PP
Sbjct: 19   GAPGPQPSPHQSPQAPQR--GSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 661 PPPPPPPP 684
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1326 PPXXGXPPPPP 1358
            PP    PPPPP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1314 PPPPPPXXGXP 1346
            PPPPPP    P
Sbjct: 343  PPPPPPSSSGP 353


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +3

Query: 48  EPLLVVGFLYTLFLCV----IIYRKIRFFNSQV 134
           EP+L++ ++Y L++ +    II RK R F  ++
Sbjct: 118 EPILLIAYIYHLYMGLLSGGIILRKKREFMQKI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,415
Number of Sequences: 438
Number of extensions: 21026
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48505452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)