Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F12
         (1353 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    28   0.14 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    28   0.14 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    28   0.14 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    28   0.14 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   2.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   2.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   5.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   9.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 372  SERFEHIPVLRTPKRHVSRRTALEITRRRIDFDLPEYTELGDLQKKSYKNTTTKDTAV*K 551
            ++R +HI     P  H+SRR ++  + R     L   TE G    +S   T ++  +   
Sbjct: 1145 NKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGG--DESANETDSETVSTVP 1202

Query: 552  QNQR 563
            QN+R
Sbjct: 1203 QNKR 1206


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 372  SERFEHIPVLRTPKRHVSRRTALEITRRRIDFDLPEYTELGDLQKKSYKNTTTKDTAV*K 551
            ++R +HI     P  H+SRR ++  + R     L   TE G    +S   T ++  +   
Sbjct: 1145 NKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGG--DESANETDSETVSTVP 1202

Query: 552  QNQR 563
            QN+R
Sbjct: 1203 QNKR 1206


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 372  SERFEHIPVLRTPKRHVSRRTALEITRRRIDFDLPEYTELGDLQKKSYKNTTTKDTAV*K 551
            ++R +HI     P  H+SRR ++  + R     L   TE G    +S   T ++  +   
Sbjct: 1145 NKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGG--DESANETDSETVSTVP 1202

Query: 552  QNQR 563
            QN+R
Sbjct: 1203 QNKR 1206


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 372  SERFEHIPVLRTPKRHVSRRTALEITRRRIDFDLPEYTELGDLQKKSYKNTTTKDTAV*K 551
            ++R +HI     P  H+SRR ++  + R     L   TE G    +S   T ++  +   
Sbjct: 1145 NKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGG--DESANETDSETVSTVP 1202

Query: 552  QNQR 563
            QN+R
Sbjct: 1203 QNKR 1206


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 141 SGKTTETSEAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSE 278
           SG    +  A  G L  SP ++ + +  PP R+P+   +K    S+
Sbjct: 92  SGSEMSSPGAGSGNL--SPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 141 SGKTTETSEAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSE 278
           SG    +  A  G L  SP ++ + +  PP R+P+   +K    S+
Sbjct: 92  SGSEMSSPGAGSGNL--SPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 TTETSEAKKGFLASSPDVEVRASIAP 227
           T  T+EA      S+P  EV  S+AP
Sbjct: 450 TVSTTEAPPAPAVSNPQNEVDGSVAP 475


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 810 YYHYLSTLNYFHKLLF 763
           YY YL     +HKL F
Sbjct: 42  YYQYLQNAALYHKLQF 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,533
Number of Sequences: 336
Number of extensions: 3615
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 40179551
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)