Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F12
         (1353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.28 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 1089 SGGGXGGFSGXXXXPPPGXRG 1151
            +GGG GGF G    PPPG  G
Sbjct: 186  NGGGFGGFGGGSGGPPPGPGG 206


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = -3

Query: 1237 PPXXXNPXPXXXPGXXXXXXXXGGXPKXXPLXPGGGXFXXPEKPPXPP 1094
            PP    P P   P          G P   P  PG      P  PP PP
Sbjct: 736  PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 1168 GXPKXXPLXPGGGXFXXPEKPPXPPPDXXXK 1076
            G P   P  PG   F  P +PP PPP    K
Sbjct: 7    GNPPPPPPPPG---FEPPSQPPPPPPPGYVK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,707
Number of Sequences: 5004
Number of extensions: 56353
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)