Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F12
(1353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.27
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.27
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.27
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 5.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 5.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 5.7
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 29 10.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.27
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 1258 PXXGNXXPPXXXNPXPXXXPGXXXXXXXXGGXPKXXPLXPGGGXFXXPEKPPXPPP 1091
P G PP P G GG P P P GG P PP PPP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP--PPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.27
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 1258 PXXGNXXPPXXXNPXPXXXPGXXXXXXXXGGXPKXXPLXPGGGXFXXPEKPPXPPP 1091
P G PP P G GG P P P GG P PP PPP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP--PPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.27
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 1258 PXXGNXXPPXXXNPXPXXXPGXXXXXXXXGGXPKXXPLXPGGGXFXXPEKPPXPPP 1091
P G PP P G GG P P P GG P PP PPP
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP--PPPPPP 373
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 165 EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 290
E K+GF+ SPD R + P P P + D E + C
Sbjct: 1900 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 1941
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 165 EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 290
E K+GF+ SPD R + P P P + D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 165 EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 290
E K+GF+ SPD R + P P P + D E + C
Sbjct: 1900 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 1941
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 165 EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 290
E K+GF+ SPD R + P P P + D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 165 EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 290
E K+GF+ SPD R + P P P + D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 28.7 bits (61), Expect = 10.0
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 QKYESDSETDSCGSEQQEEYLD--NELLHXXXXXXXXQTLDSERFEHIPVLRTPKRHVSR 428
++YE D + G ++ E L+ N+L + D+E+FE ++TP V
Sbjct: 299 REYEEDKKLKEPGEHEETEKLEKPNKLENSKKFMELETQDDNEKFEETKEIKTPMEPVKL 358
Query: 429 RTALEITRRRIDFDLPEYTELGDLQK 506
E + +L E+ EL L +
Sbjct: 359 E---ETEKLEKPSELKEFNELAQLNE 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,360,272
Number of Sequences: 27780
Number of extensions: 355957
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3808844148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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