Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F11
(1358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 114 2e-26
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 9e-06
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 32 0.21
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.37
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.64
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 1.5
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 4.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 4.5
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 7.9
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 114 bits (275), Expect = 2e-26
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Frame = +1
Query: 211 EDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGW 390
E KE T E +E++ K + S DE E +++QVE+YF D NL DKFL + +DGW
Sbjct: 43 EKKEETTEK--KEDDGKKDLSFDEAE----VLKQVEFYFSDTNLPHDKFLWTTSQKNDGW 96
Query: 391 VPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRK 570
VP++ + F R+ + + + I NAL KS LLEV E +KVRR PL ++ K
Sbjct: 97 VPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEAGEKVRR--MIPLVRVD---NK 149
Query: 571 EICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTR 750
+ RS+Y KGF D D + K F+E I + + K+ FKGSVF FK
Sbjct: 150 SVMERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVRMRRDDDKK-FKGSVFVEFKEP 207
Query: 751 EQAEKFM---NAKGHKYGDNELLTLWQEDYLQQKQE 849
+ A KF+ K+G++EL + +++Y+ K E
Sbjct: 208 DVANKFLEKVKTAPLKWGEDELTIMSKKEYVDMKAE 243
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 9e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 310 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 489
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 490 LEVSED 507
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.9 bits (69), Expect = 0.21
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 727 VFATFKTREQAEKFMNA-KGH-KYGDNELLTLWQEDYLQQKQEE 852
VF FK Q + F + KG Y D+E+L+ +ED LQ++QEE
Sbjct: 131 VFNRFKADGQEKDFEDTDKGQIMYSDDEILSEGEEDALQKQQEE 174
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.1 bits (67), Expect = 0.37
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 238 NGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 384
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.64
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Frame = +1
Query: 448 DVIANALNKSTSGLLEVSEDNKKVRRNPEQPL------PEMNEELRKEIC--NRS---IY 594
D+ AL+ +T E E++K N Q E NE+ +E NR ++
Sbjct: 107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMF 166
Query: 595 AKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFMN 774
G + + D L +YF+QF EV + + R ST R +G F TFK + + M+
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFKNPKCVNEVMS 222
Query: 775 AKGHKYG 795
+ H G
Sbjct: 223 KEHHLDG 229
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 1.5
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +1
Query: 325 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 486
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 487 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 660
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 4.5
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +1
Query: 265 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTED 444
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 445 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 618
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 619 SLD 627
LD
Sbjct: 140 KLD 142
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 631 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTREQAEKFM 771
LLN+FK+++ VE + + R + + K F VF TF+++ + E M
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQFKKESGM 206
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 7.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 688 VEKSTKKR-LFKGSVFATFKTREQAEKFMNAKGHKYGDNELLTLWQEDYLQQKQEE 852
VE +K L + KT Q E NA G +YGD+ + W D+L E+
Sbjct: 27 VEADSKPNDLTAANSIVDLKTNSQHEN-ANAAGKEYGDSGVSESWVLDFLSVTGEK 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,828,971
Number of Sequences: 5004
Number of extensions: 68902
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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