Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F10
(1317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 3.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 4.4
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 7.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 7.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 7.6
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 7.6
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 808 LSCTPPGNATASTPSSFSYAT 870
+S PP +A+ STP+S SYA+
Sbjct: 226 ISAAPPDSASESTPASTSYAS 246
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 958 PKNPLFVPFIPSFAPISPTFIP 893
P +P + P PS++P SP++ P
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSP 1594
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSP 1601
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSP 1636
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSP 1643
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSP 1650
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPSYSP 1657
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1642 SPTSPSYSPTSPSYSPTSPSYSP 1664
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSP 1671
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSP 1678
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1663 SPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1670 SPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1698 SPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1705 SPTSPSYSPTSPSYSPTSPSYSP 1727
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1712 SPTSPSYSPTSPSYSPTSPSYSP 1734
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1719 SPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIP 893
+P +P + P PS++P SP++ P
Sbjct: 1726 SPTSPSYSPTSPSYSPTSPSYSP 1748
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 348 HIDQVPSEYLSHKEKYELAIKKASLMFKLLR 440
H D V EYL HKE Y + S K++R
Sbjct: 601 HPDLVTREYLLHKEDYNYGDPEKSGKLKVIR 631
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 342 GIHIDQVPSEYLSHKEKYELAIKKASLMFKLLRKWQE 452
G+ ++Q +YL+ KEK++ A + + +LL+ +E
Sbjct: 934 GVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEE 970
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 699 TYDPKTKEFVLHSPSLTAYKWWPGGLAHTAN 791
TY PK + LH SLT Y +P AH N
Sbjct: 261 TYSPKRQSTGLHRRSLTNYFKFPHRNAHQHN 291
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 692 CLKTTD-ESTVTQFCLCISSNDVYIECSSYPICLLF 588
C+KT + E+TV CLC++ N V CS+ C+++
Sbjct: 92 CIKTIELEATVN--CLCVNENLVVCGCSN-SSCIVY 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,192,149
Number of Sequences: 5004
Number of extensions: 86259
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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