Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F10
(1317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 188 8e-48
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 132 8e-31
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 117 2e-26
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 33 0.66
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 3.5
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 3.5
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 8.2
03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479 29 8.2
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 188 bits (458), Expect = 8e-48
Identities = 86/149 (57%), Positives = 106/149 (71%), Gaps = 3/149 (2%)
Frame = +3
Query: 540 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGLETTATYDPKTK 719
LH+ MF+P + GQGT EQQ W+ A+ IIG YAQTELGHG+ V+GLETTAT+DPKT
Sbjct: 106 LHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPKTD 165
Query: 720 EFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRDEETHMPLPGI 899
EFV+HSP+LT+ KWWPGGL + + +V A+L T GK +GIH FIVQLR E H PLPG+
Sbjct: 166 EFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQLRSLEDHSPLPGV 225
Query: 900 KVGEXGAKLG---MNGTNNGFLGLXHVRI 977
+G+ G K G N +NG L HVRI
Sbjct: 226 TLGDIGGKFGSGAYNSMDNGVLRFDHVRI 254
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 132 bits (318), Expect = 8e-31
Identities = 59/146 (40%), Positives = 95/146 (65%)
Frame = +3
Query: 540 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGLETTATYDPKTK 719
+H+ ++ + GT W+ N I G ++ TELGHG+ VRG+ET ATYD KT+
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKTR 219
Query: 720 EFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRDEETHMPLPGI 899
EFV+++P +A K+W GG A+ A + IV AQL+ G+ G+HAF+ Q+RDE ++ +P I
Sbjct: 220 EFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRDEHENV-MPNI 278
Query: 900 KVGEXGAKLGMNGTNNGFLGLXHVRI 977
++ + G K+G+NG +NG + ++R+
Sbjct: 279 QIADCGHKIGLNGVDNGRIWFNNIRV 304
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 117 bits (282), Expect = 2e-26
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 7/174 (4%)
Frame = +3
Query: 477 YRAVLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTE 656
Y AV+ A G A + G L + Y ++ +++ GT + + + N+D G +A TE
Sbjct: 135 YFAVMEAA-GGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTE 193
Query: 657 LGHGTFVRGLETTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLY--TAGK 830
L HG+ V+ L+TTAT+DP T EF++++P+ A KWW G A + V A+L GK
Sbjct: 194 LHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFATVFARLILPLQGK 253
Query: 831 -----CHGIHAFIVQLRDEETHMPLPGIKVGEXGAKLGMNGTNNGFLGLXHVRI 977
GIHAFIV +RD +T+ LPGI++ + G K+G+NG +NG L VRI
Sbjct: 254 GGDPADMGIHAFIVPIRDLDTNAVLPGIEINDCGHKIGLNGVDNGALRFRSVRI 307
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 32.7 bits (71), Expect = 0.66
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -2
Query: 944 IRSIHTKFRTXFADFYTWQRHMSLFVA*LNDEGVDAVAFPGGVQLSHHDTIVGRVSQS 771
IR+I +F++ + W+ M + V+ + + + + FPGG++ S VG+ +++
Sbjct: 474 IRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARA 531
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 813 LYTAGKCHGIHAFIVQLRDEETHM 884
L+T C GIH F VQ+R +E H+
Sbjct: 585 LHTVIMCEGIHPFEVQIRTKEMHL 608
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 3.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 961 NPKNPLFVPFIPSFAPISPTFIPG 890
+P +P + P PS++P SP++ PG
Sbjct: 1565 SPTSPSYSPASPSYSPTSPSYTPG 1588
>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 1015 PPXLAFSSAKLFRILTXSNPKNPLFVPFIPSFAPISPTFIP 893
PP A +F +P+ P +VP P +AP P+++P
Sbjct: 668 PPVYAPYPPGIFPSPPEYSPEPPSYVPSPPQYAPQPPSYVP 708
>03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479
Length = 180
Score = 29.1 bits (62), Expect = 8.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 488 ARWCSWI-SNPR----RWLSSHPALCDVYTNIDGARNSRTTSILD 607
ARW SWI NP + +++ CD + +DG NS +L+
Sbjct: 43 ARWISWIPDNPGCRYFKCVNARSGCCDYFAWVDGPSNSFVREVLN 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,551,153
Number of Sequences: 37544
Number of extensions: 572267
Number of successful extensions: 1464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4120436808
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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