Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F08
(1414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.21
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.21
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.21
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.49
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.49
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.49
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 32 0.85
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 32 0.85
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 2.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 4.6
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 30 4.6
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 30 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 8.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.3 bits (75), Expect = 0.21
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXP 871
PPP P PP P G GG P G PPPP G G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPG-GCP 769
Query: 870 XPXXKGXXGPXXEKXPPXP 814
P G PP P
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
Score = 32.7 bits (71), Expect = 0.65
Identities = 24/83 (28%), Positives = 25/83 (30%)
Frame = -1
Query: 592 PLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXD 413
P+ P P P P PPP G P P PP P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGPPPPPPP 764
Query: 412 KXXNPXKPPXXPPXXGGXKXAPP 344
P PP PP GG K PP
Sbjct: 765 PGGCPPPPPPPPP--GGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.3 bits (75), Expect = 0.21
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXP 871
PPP P PP P G GG P G PPPP G G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPG-GCP 769
Query: 870 XPXXKGXXGPXXEKXPPXP 814
P G PP P
Sbjct: 770 PPPPPPPPGGFKGGPPPPP 788
Score = 32.7 bits (71), Expect = 0.65
Identities = 24/83 (28%), Positives = 25/83 (30%)
Frame = -1
Query: 592 PLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXD 413
P+ P P P P PPP G P P PP P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGPPPPPPP 764
Query: 412 KXXNPXKPPXXPPXXGGXKXAPP 344
P PP PP GG K PP
Sbjct: 765 PGGCPPPPPPPPP--GGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.3 bits (75), Expect = 0.21
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXP 871
PPP P PP P G GG P G PPPP G G P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPPPPG-GCP 352
Query: 870 XPXXKGXXGPXXEKXPPXP 814
P G PP P
Sbjct: 353 PPPPPPPPGGFKGGPPPPP 371
Score = 32.7 bits (71), Expect = 0.65
Identities = 24/83 (28%), Positives = 25/83 (30%)
Frame = -1
Query: 592 PLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXD 413
P+ P P P P PPP G P P PP P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLP---PITGGPPPPPPPGGLPPISGGPPPPPPP 347
Query: 412 KXXNPXKPPXXPPXXGGXKXAPP 344
P PP PP GG K PP
Sbjct: 348 PGGCPPPPPPPPP--GGFKGGPP 368
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.49
Identities = 27/111 (24%), Positives = 31/111 (27%)
Frame = -2
Query: 1152 PPKKXGXPXXXKXKKGFXXGXGXXXPPXXKXXXXPPPXXPXXXXXPPXXXXPXGXKKXXX 973
PP K P G PP PPP PP P +
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 972 XXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPP 820
+ G P GG PPP G G P P + E+ PP
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPR-QKRQAPERSPP 345
Score = 32.3 bits (70), Expect = 0.85
Identities = 28/112 (25%), Positives = 28/112 (25%), Gaps = 6/112 (5%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPX----G 883
PPP PP P GG P G PPPP
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 339
Query: 882 XGXPXPXXKGXXGPXXEKXPPX--PGKKXNXXXXXGRGXXXGXRXGPXRGKR 733
P G PP PGK G G R GP G R
Sbjct: 340 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 391
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Frame = -1
Query: 559 PPAXXXXPXPPPR----MXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXDKXXNPXK 392
PPA P PPP+ + G P P P PP P +P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 391 P-PXXPPXXGGXKXAPP 344
P PP + +PP
Sbjct: 292 PRAGSPPPPPPPRGSPP 308
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P G P PP P
Sbjct: 245 GSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P P PP P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/79 (22%), Positives = 20/79 (25%)
Frame = -2
Query: 1047 PPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPX 868
PP PP P + G P G PPPP G P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 867 PXXKGXXGPXXEKXPPXPG 811
P P + P G
Sbjct: 292 PRAGSPPPPPPPRGSPPTG 310
Score = 29.1 bits (62), Expect = 8.0
Identities = 28/100 (28%), Positives = 32/100 (32%)
Frame = -1
Query: 598 SGPLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRX 419
S PL P P PPA PPP G P P P + PP P
Sbjct: 246 SPPLAGSGSPPP-PPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Query: 418 XDKXXNPXKPPXXPPXXGGXKXAPPX*DRTXXHPSRXXXQ 299
+ +P PP GG PP + P R Q
Sbjct: 302 PPR-GSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKRQ 338
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.49
Identities = 27/111 (24%), Positives = 31/111 (27%)
Frame = -2
Query: 1152 PPKKXGXPXXXKXKKGFXXGXGXXXPPXXKXXXXPPPXXPXXXXXPPXXXXPXGXKKXXX 973
PP K P G PP PPP PP P +
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 972 XXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPP 820
+ G P GG PPP G G P P + E+ PP
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPR-QKRQAPERSPP 366
Score = 32.3 bits (70), Expect = 0.85
Identities = 28/112 (25%), Positives = 28/112 (25%), Gaps = 6/112 (5%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPX----G 883
PPP PP P GG P G PPPP
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 360
Query: 882 XGXPXPXXKGXXGPXXEKXPPX--PGKKXNXXXXXGRGXXXGXRXGPXRGKR 733
P G PP PGK G G R GP G R
Sbjct: 361 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 412
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Frame = -1
Query: 559 PPAXXXXPXPPPR----MXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXDKXXNPXK 392
PPA P PPP+ + G P P P PP P +P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 391 P-PXXPPXXGGXKXAPP 344
P PP + +PP
Sbjct: 313 PRAGSPPPPPPPRGSPP 329
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P G P PP P
Sbjct: 266 GSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P P PP P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/79 (22%), Positives = 20/79 (25%)
Frame = -2
Query: 1047 PPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPX 868
PP PP P + G P G PPPP G P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 867 PXXKGXXGPXXEKXPPXPG 811
P P + P G
Sbjct: 313 PRAGSPPPPPPPRGSPPTG 331
Score = 29.1 bits (62), Expect = 8.0
Identities = 28/100 (28%), Positives = 32/100 (32%)
Frame = -1
Query: 598 SGPLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRX 419
S PL P P PPA PPP G P P P + PP P
Sbjct: 267 SPPLAGSGSPPP-PPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Query: 418 XDKXXNPXKPPXXPPXXGGXKXAPPX*DRTXXHPSRXXXQ 299
+ +P PP GG PP + P R Q
Sbjct: 323 PPR-GSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKRQ 359
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.49
Identities = 27/111 (24%), Positives = 31/111 (27%)
Frame = -2
Query: 1152 PPKKXGXPXXXKXKKGFXXGXGXXXPPXXKXXXXPPPXXPXXXXXPPXXXXPXGXKKXXX 973
PP K P G PP PPP PP P +
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRT---GSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 972 XXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPP 820
+ G P GG PPP G G P P + E+ PP
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPR-QKRQAPERSPP 351
Score = 32.3 bits (70), Expect = 0.85
Identities = 28/112 (25%), Positives = 28/112 (25%), Gaps = 6/112 (5%)
Frame = -2
Query: 1050 PPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPX----G 883
PPP PP P GG P G PPPP
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 345
Query: 882 XGXPXPXXKGXXGPXXEKXPPX--PGKKXNXXXXXGRGXXXGXRXGPXRGKR 733
P G PP PGK G G R GP G R
Sbjct: 346 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 397
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Frame = -1
Query: 559 PPAXXXXPXPPPR----MXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXDKXXNPXK 392
PPA P PPP+ + G P P P PP P +P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 391 P-PXXPPXXGGXKXAPP 344
P PP + +PP
Sbjct: 298 PRAGSPPPPPPPRGSPP 314
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P G P PP P
Sbjct: 251 GSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXP 814
G P G PPPP G P P P PP P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/79 (22%), Positives = 20/79 (25%)
Frame = -2
Query: 1047 PPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXPPPPXGXGXPX 868
PP PP P + G P G PPPP G P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 867 PXXKGXXGPXXEKXPPXPG 811
P P + P G
Sbjct: 298 PRAGSPPPPPPPRGSPPTG 316
Score = 29.1 bits (62), Expect = 8.0
Identities = 28/100 (28%), Positives = 32/100 (32%)
Frame = -1
Query: 598 SGPLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRX 419
S PL P P PPA PPP G P P P + PP P
Sbjct: 252 SPPLAGSGSPPP-PPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Query: 418 XDKXXNPXKPPXXPPXXGGXKXAPPX*DRTXXHPSRXXXQ 299
+ +P PP GG PP + P R Q
Sbjct: 308 PPR-GSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKRQ 344
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/79 (26%), Positives = 21/79 (26%)
Frame = -2
Query: 1077 PPXXKXXXXPPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXP 898
PP PP P PP P Q G P G P
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMP 752
Query: 897 PPPXGXGXPXPXXKGXXGP 841
PPP G P G GP
Sbjct: 753 PPPHGQYQPQQQQGGPMGP 771
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like protein
protein.
Length = 789
Score = 32.3 bits (70), Expect = 0.85
Identities = 21/79 (26%), Positives = 21/79 (26%)
Frame = -2
Query: 1077 PPXXKXXXXPPPXXPXXXXXPPXXXXPXGXKKXXXXXXXXKKNXSXQGGEPXXXXGGVXP 898
PP PP P PP P Q G P G P
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMP 752
Query: 897 PPPXGXGXPXPXXKGXXGP 841
PPP G P G GP
Sbjct: 753 PPPHGQYQPQQQQGGPMGP 771
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 912 GGVXPPPPXGXGXPXPXXKGXXGPXXEKXPPXPG 811
GG PPPP G G P GP PP PG
Sbjct: 407 GGYGPPPPGGPGAPGSYGPPQGGPGG-FGPPPPG 439
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 933 GEPXXXXGGVXPPPPXGXGXPXPXXKGXXGPXXEKXPP 820
G P GG PPPP G G P G P PP
Sbjct: 424 GPPQGGPGGFGPPPPGGPGAYGPPPTGF--PPVGAPPP 459
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 3.4
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Frame = -1
Query: 580 KSXPRP*PPAXXXXPXPPP-----RMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXX 416
K PRP PP P PPP G P P P + PP P
Sbjct: 528 KDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLG 587
Query: 415 DKXXNPXKPPXXPPXXGG 362
PP PP GG
Sbjct: 588 G-------PPPPPPPPGG 598
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 4.6
Identities = 24/89 (26%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Frame = -1
Query: 601 PSGPLFKKSXPRP*PPAXXXXP-XPPPRMXGXXXPXPXXXXXRSPXXEN--XXPPXXXXX 431
P P P P PP P PPP G P P R+P PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 430 XPRXXDKXXNPXKPPXXPPXXGGXKXAPP 344
P PP GG PP
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 4.6
Identities = 24/89 (26%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Frame = -1
Query: 601 PSGPLFKKSXPRP*PPAXXXXP-XPPPRMXGXXXPXPXXXXXRSPXXEN--XXPPXXXXX 431
P P P P PP P PPP G P P R+P PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 430 XPRXXDKXXNPXKPPXXPPXXGGXKXAPP 344
P PP GG PP
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.9 bits (64), Expect = 4.6
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = -1
Query: 598 SGPLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRX 419
S PL P PPA P PPP+ P P R P E P +
Sbjct: 72 SPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQ 131
Query: 418 XDKXXNPXKPPXXP 377
+ PP P
Sbjct: 132 QLRPTTAVSPPKPP 145
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.9 bits (64), Expect = 4.6
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = -1
Query: 598 SGPLFKKSXPRP*PPAXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRX 419
S PL P PPA P PPP+ P P R P E P +
Sbjct: 294 SPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQ 353
Query: 418 XDKXXNPXKPPXXP 377
+ PP P
Sbjct: 354 QLRPTTAVSPPKPP 367
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 8.0
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -1
Query: 577 SXPRP*PP----AXXXXPXPPPRMXGXXXPXPXXXXXRSPXXENXXPPXXXXXXPRXXDK 410
S P P PP A P PPP P P R P PP PR
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPP---MTPPSPQRRPPRTPPS 177
Query: 409 XXNPXKPPXXPP 374
P PP PP
Sbjct: 178 -PEPRNPPRTPP 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,471
Number of Sequences: 27780
Number of extensions: 251275
Number of successful extensions: 948
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4016977708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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