Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F07
         (1266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   4.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   5.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   9.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   9.6  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 205  ESSKDINIVHYATFFAA*LQKYTTHAVNYGIQTINSNSKF 86
            E S D N +H +  FAA ++   TH + +G+ T  +  +F
Sbjct: 1571 EVSGDYNPIHVSPTFAAFVELPGTHGITHGMYTSAAARRF 1610


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 207 LSLRRTSISFTMLHFSQLN-SKNIPHMLSITVSKRSTAIQSFKWF 76
           L  R  +I   + HF+     K++ H LS T     T IQ FKWF
Sbjct: 104 LQKRVLNILIDLWHFNPSEIEKSLIH-LSTTSKSAETRIQCFKWF 147


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 248 SEIGQHIVFVASVLWMQGPQMTLQPLENECGILLYNGDIFDE 373
           S+   H+  +  V+W+  PQ     LE EC +   N    ++
Sbjct: 242 SDNNSHLYGICVVVWVAMPQSMQNDLEKECEVWRANNTTVED 283


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 382 IPRFVKYITIIQKDATFIFERL*CHLRTLH 293
           +P FVK++ ++  DAT++ +     L  +H
Sbjct: 723 LPFFVKFVALMLNDATYLLDEALLKLTEIH 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,147,408
Number of Sequences: 5004
Number of extensions: 82140
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)